Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5 127 3e-23 seq3 100 5e-15 >seq5 Length=13709650 Score = 127 bits (140), Expect = 3e-23 Identities = 228/328 (70%), Gaps = 9/328 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 |||||||| ||| |||||||||||| | |||| | || |||||||| || || || Sbjct 2138208 CCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAAC-CCAGGCATGAGTCCTCGTTT 2138266 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||| ||||| ||||||| ||||| || || ||||| ||||| || || || || || Sbjct 2138267 CTTAAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAA 2138326 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCA 794519 | |||| || || ||||| || | || || || |||||| ||||||||||| Sbjct 2138327 AGCAACGATTCGTTCAGCAAAGGTCTG-AGATCC-----GTCGATCCATTTCATCGCCCA 2138380 Query 794520 CTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTC 794579 || || || ||| || | || | ||| || || ||||| ||||| ||||| |||| Sbjct 2138381 CTGAGCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGCGGAAGAGATGGTCTCTCTC 2138440 Query 794580 GACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTC 794639 || |||| ||| || |||| || || || |||| || || || || || Sbjct 2138441 TTTGTTATCTTTGATGTAAGTATCGAGAAGAAGACTATACATCTCAGAATGAATATTCTC 2138500 Query 794640 GATGGCGATCTGGAAGCCATA-AAAGCA 794666 || ||||||||||| || || |||||| Sbjct 2138501 AATCGCGATCTGGAAACCGTAGAAAGCA 2138528 >seq3 Length=15040190 Score = 100 bits (110), Expect = 5e-15 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 || |||||||| ||||||||||| |||||||||||| ||| | ||| ||| ||| | Sbjct 2942920 TTAGTGACGGCTTTGGTACCCTCAGAGACGGCGTGCTTGGATAATTCACCGGGCAACACG 2942979 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || | |||||||| ||||| || |||| ||||||| ||||||| | ||| Sbjct 2942980 AGCCTAACGGCGGTTTGGATTTCCCGGGAAGTGATCGTGGGTTTCTTGTTATACCTAGCC 2943039 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 | ||| | |||||| ||| |||| |||||||||| || ||||||||| Sbjct 2943040 AAGCGCGACGACTCGGTAGCGAGTTTCTCGAAGATGTCGTTGATGAAACTGTTCATGATT 2943099 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 ||| | ||| |||||| || | || || || ||||| || | ||| ||| ||| Sbjct 2943100 CCCATGGCTTTTCCGGAGATCCCGATATCAGGATGAACCTGTTTCAACACTTTGAAAA 2943157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916164172464347