Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq2 98.7 8e-16 seq7 89.7 4e-13 seq1 87.8 1e-12 >seq6 Length=16577294 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || || || || || || || ||| | || |||| | Sbjct 14990385 ATGCAAATCTTTGTCAAGACGTTGACCGGGAAGACTATCACCTTGGAGGTGGAGAGTTCT 14990444 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || ||||| || | || ||| ||| Sbjct 14990445 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGTATCCCACCGGACCAG 14990504 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| || || ||| ||||||||| || ||| |||| ||||||||| Sbjct 14990505 CAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAGGACGGCAGAACCTTGGCTGACTACAAC 14990564 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || |||||||||||||| | ||| |||| ||| | |||| || || Sbjct 14990565 ATCCAAAAGGAGTCTACCCTTCACTTGGTCTTGCGTCTGCGTGGAGG 14990611 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||| ||||| |||| ||||| ||||| || |||| ||| ||| Sbjct 735791 ATGCAAATTTTTGTGAAAACACTAACTGGCAAGACCATCACTCTCGAGGTCGAGAGCTCA 735732 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| || || |||||| | || |||||| Sbjct 735731 -GACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCA 735673 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||| | || | || ||||||||||| || || | | || |||| || ||||| Sbjct 735672 GCAGAGATTAATCTTCGCTGGTAAACAGCTCGAAGATGGCCGTACCTTGGCTGATTACAA 735613 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| || |||||||| || | ||| |||| | | ||| |||| || Sbjct 735612 CATCCAGAAGGAGTCGACCCTCCACTTGGTTCTCCGGTTGAGAGGTGG 735565 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| ||| | || ||||| ||||| ||| |||| ||| ||| Sbjct 735563 ATGCAGATCTTTGTCAAGACTCTCACCGGCAAGACCATCACCCTCGAGGTTGAGAGCTCT 735504 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| ||| | | || || |||||| || || ||||| | || ||| || Sbjct 735503 -GACACTATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCA 735445 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||| | ||| ||||| ||||| ||||| | | ||| | || |||||||| Sbjct 735444 ACAGAGGCTTATCTTTGCCGGTAAGCAGCTAGAGGATGGCCGTACACTAGCTGACTACAA 735385 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || || ||||| || | || ||||| Sbjct 735384 CATCCAGAAAGAGTCCACCCTTCATTTGGTG 735354 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || ||||| || ||||||||||| ||| | || ||| | Sbjct 8339205 ATGCAGATCTTTGTGAAGACTTTGACTGGCAAAACCATCACCCTTGAGGTTGAGAGTTCA 8339264 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || || ||||| |||||||| || | || ||||||| Sbjct 8339265 GACACTATTGACAATGTTAAGGCTAAGATCCAGGATAAAGAGGGAATCCCACCGGATCAG 8339324 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | ||| |||||||| | ||||| | ||| | ||||| ||||| Sbjct 8339325 CAGAGACTTATCTTTGCCGGTAAACAATTAGAGGATGGTCGCACACTTGCGGATTACAAT 8339384 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || || ||||| || || | ||| |||| Sbjct 8339385 ATCCAGAAGGAATCAACCCTTCACTTGGT 8339413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || || || ||||||||||| ||| |||| ||| ||| Sbjct 6990880 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAAACCATCACCCTCGAGGTTGAGAGCTCA 6990821 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| ||||| |||||||| || | || ||| || Sbjct 6990820 -GACACCATTGACAATGTCAAAGCCAAGATCCAAGATAAAGAGGGAATCCCACCGGACCA 6990762 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||||| || ||||| || |||| | || | || |||||||| Sbjct 6990761 GCAGAGGCTTATATTCGCGGGCAAGCAGCTTGAAGACGGAAGGACTCTTGCTGACTACAA 6990702 Query 107735 CATTCAAAAGGAGTCTAC 107752 || ||||||||||| || Sbjct 6990701 TATCCAAAAGGAGTCGAC 6990684 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/215 (69%), Gaps = 10/215 (5%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || |||| ||||| ||||| || | || |||| ||| Sbjct 735335 ATGCAGATTTTTGTCAAGACCCTAACCGGCAAGACCATCACTTTGGAGGTGGAGAGCTCT 735276 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || ||| |||||| || || ||||| | || || || Sbjct 735275 -GACACAATCGACAACGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCA 735217 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACT 107730 ||||||||| || | || || || ||||| || |||||| || | ||||| | Sbjct 735216 GCAGAGACTCATCTTCGCTGGGAAGCAGCTCGAAGATGGACGC----ACCCTAGCGGATT 735161 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||| || ||||||||||| | ||| ||||| Sbjct 735160 ACAACATCCAGAAGGAGTCTACCCTTCACTTGGTG 735126 >seq2 Length=14066726 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || || ||||| ||||||||||| | || ||| ||| Sbjct 7053605 ATGCAGATCTTTGTGAAGACGTTGACAGGAAAAACCATTACTTTGGAGGTTGAGAGCTCT 7053546 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || ||| |||||| || || ||||| | || |||||| Sbjct 7053545 -GATACTATTGACAATGTTAAAGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGATCA 7053487 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||| ||| | ||||| | ||| | || || ||||| Sbjct 7053486 GCAGAGGCTTATCTTTGCTGGTAAGCAGTTAGAGGATGGTCGCACACTTGCTGATTACAA 7053427 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| |||||||||||||| Sbjct 7053426 CATCCAAAAGGAGTCTAC 7053409 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| || ||||| | || ||||| |||||||| | || ||| ||| Sbjct 7053833 ATGCAAATTTTCGTGAAAACACTTACTGGCAAGACCATTACTCTTGAGGTAGAGAGCTCT 7053774 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| ||| | | || || ||||||| || || ||||| | || |||||| Sbjct 7053773 -GACACTATCGACAATGTTAAGGCAAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCA 7053715 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| ||| | || | ||| ||||||||||| ||||| | || ||||||| ||||| Sbjct 7053714 GCAAAGATTGATCTTTGCCGGTAAACAGCTTGAGGATGGACGTACCTTGGCGGATTACAA 7053655 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || ||||| || || | ||| |||| | || || |||| || Sbjct 7053654 TATACAGAAGGAATCAACTCTCCACTTGGTTCTCAGGTTAAGAGGTGG 7053607 >seq7 Length=17303919 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || ||| |||| ||||| ||||| | | ||| || ||| Sbjct 14232331 ATGCAAATCTTTGTTAAGACTCTAACTGGCAAGACCATAATTCTTGAAGTTGAAAGCTC- 14232273 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || | | | || || ||||| || || ||||| | | |||| || Sbjct 14232272 CGACACCATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCTACTGGACCA 14232213 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||||||||| |||||||| || || || ||||| | | || ||||||| ||||| Sbjct 14232212 GCAGAGACTTATCTATGCGGGGAAGCAACTTGAGGATGGCCGTACTTTGGCGGATTACAA 14232153 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||| || | ||| |||| | || ||| |||| || Sbjct 14232152 TATTCAGAAGGAGTCAACTCTACACTTGGTTCTTAGGTTGAGAGGAGG 14232105 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| |||||| | || |||||||||||||| | ||| ||| ||| Sbjct 14231875 ATGCAAATATTTGTGAAAACTCTCACCGGCAAAACCATTACTCTAGAAGTTGAGAGCT-C 14231817 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| ||||| || || ||||| | || ||| || Sbjct 14231816 TGACACCATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGGATCCCTCCGGACCA 14231757 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || ||||||| | |||||| || || || ||||| | ||| | ||||| ||||| Sbjct 14231756 ACAACGACTTATCTTTGCGGGCAAGCAACTCGAGGATGGTCGGACACTTGCGGATTACAA 14231697 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || |||||||| || |||| |||| Sbjct 14231696 CATCCAGAAGGAGTCAACTCTGCATTTGGT 14231667 >seq1 Length=19566579 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || ||||| ||||| ||||| || || || || ||| | || ||| | Sbjct 8289743 AAAATGCAGATCTTTGTGAAAACCTTAACGGGGAAGACAATAACCCTAGAGGTAGAGTCA 8289802 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || ||| ||||| || || ||||| | || ||| Sbjct 8289803 TCAGACACGATCGACAATGTGAAAGCGAAGATCCAAGACAAGGAAGGGATCCCACCGGAC 8289862 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || ||||||||||| |||| | |||| | || |||||| Sbjct 8289863 CAGCAGCGTCTGATCTTCGCCGGGAAACAGCTGGAAGACGGGAGAACACTCGCCGACTAC 8289922 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || || ||||| ||| | || ||||| Sbjct 8289923 AACATCCAGAAAGAGTCGACGCTTCATTTGGTG 8289955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398873042206597