Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq6 141 7e-29 seq2 138 9e-28 seq1 131 1e-25 seq7 122 7e-23 seq4 89.7 4e-13 >seq6 Length=16577294 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || ||||| || || || || |||||||||| |||||| Sbjct 8339420 ACGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGCAAGTGTGCGACC 8339361 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| || ||| | || | ||| ||||||||||| || || |||||||| Sbjct 8339360 ATCCTCTAATTGTTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGGGATTCCCTCTTT 8339301 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || | || || ||| | || | |||||| ||| || || ||||| || || Sbjct 8339300 ATCCTGGATCTTAGCCTTAACATTGTCAATAGTGTCTGAACTCTCAACCTCAAGGGTGAT 8339241 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| || || || ||||| |||||||| Sbjct 8339240 GGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCAT 8339205 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || ||||| || |||||||| || ||||| ||||| || ||||| ||||| || Sbjct 6990882 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 6990941 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| || || | |||||||||||||| ||||| ||| Sbjct 6990942 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 6991001 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || ||| | || | |||||||| || || Sbjct 6991002 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCGACC 6991061 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||| | ||||| || || || ||||| Sbjct 6991062 TCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| ||||||||||| || ||||| ||||| || ||||| ||||| || Sbjct 6990426 CCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCC 6990485 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||||| ||| || || || || || ||| | || | || ||||||||||| || Sbjct 6990486 AAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGG 6990545 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||| ||||| | || ||||||| | || | || || || || || Sbjct 6990546 ATTCCCTCTTTATCTTGGATCTTAGCTTTGACATTGTCAATGGTATCTGAGCTCTCAACC 6990605 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||| ||||| | || || ||||| |||||||| Sbjct 6990606 TCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATCTGCAT 6990652 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| || || ||||||||||| || || ||||| || ||||| ||||| || Sbjct 8339203 CCACCTCTCAGCCGGAGAACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCC 8339144 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || ||||| ||||| | |||||||||||||||||||| ||| Sbjct 8339143 AAGGTACGGCCATCTTCTAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGA 8339084 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || ||| | || | |||||||| || || Sbjct 8339083 ATGCCTTCCTTGTCCTGGATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACC 8339024 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || |||||||| | ||||| || || || ||||| Sbjct 8339023 TCGAGAGTGATGGTCTTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 8338977 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| || || ||||| || || || || || || || ||||| ||||| || Sbjct 735565 CCACCTCTCAACCGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 735624 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| ||||| ||||| ||||| | || ||||| ||||||||||| ||| Sbjct 735625 AAGGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATTAATCTCTGCTGATCCGGAGGA 735684 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | ||| || ||| | || | ||||| || || || Sbjct 735685 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGAGCTCTCGACC 735744 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || |||||||||| ||||| ||||| || ||||| Sbjct 735745 TCGAGAGTGATGGTCTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 735791 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| |||||||||||||| ||||| ||||| || ||||| || || || Sbjct 735337 CCACCTCTCAGACGAAGCACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCT 735396 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || || || || ||| | || | || || || ||||| || Sbjct 735397 AGTGTACGGCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGG 735456 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || ||||| || | ||| ||||| | || | ||||||||| || || Sbjct 735457 ATACCTTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATAGTGTCAGAGCTCTCAACC 735516 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | || || ||||| |||||||| Sbjct 735517 TCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || |||||||| || |||||||| || || || | ||| || ||| Sbjct 2563537 AGGACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCCAAGGTACGGCCATCT 2563596 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 ||||| || || || ||| | || | |||||||||||||| || ||||| || ||||| Sbjct 2563597 TCGAGCTGCTTTCCGGCAAAGATAAGCCTTTGCTGATCCGGAGGGATACCTTCCTTGTCC 2563656 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || || || | || | |||||||| ||| || || || || ||||| Sbjct 2563657 TGGATCTTGGCCTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTC 2563716 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | || |||||||| |||||||| Sbjct 2563717 TTCCCGGTGAGAGTCTTAACAAAGATCTGCAT 2563748 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||||| ||||| ||||| || || || ||||| ||||| || || || Sbjct 14990611 CCTCCACGCAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCC 14990552 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | || || | || || |||||| | ||||| || ||||| ||||| || Sbjct 14990551 AAGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 14990492 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 |||||||||||||| || | || || || | || | ||||||||| || || Sbjct 14990491 ATACCCTCTTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAACTCTCCACC 14990432 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || ||||| || || || || || || ||||| || ||||| Sbjct 14990431 TCCAAGGTGATAGTCTTCCCGGTCAACGTCTTGACAAAGATTTGCAT 14990385 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || || || ||||| || || || || |||| || | Sbjct 6990665 ACGAAGTACAAGGTGAAGGGTCGACTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCC 6990724 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || || || ||||| || |||| | || ||||| ||||| || || |||||||| Sbjct 6990725 GTCTTCAAGCTGCTTGCCCGCGAATATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTT 6990784 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || ||||||| | || | ||||| || || || || || || || Sbjct 6990785 ATCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAGCTCTCAACCTCGAGGGTGAT 6990844 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| ||||| || ||||| |||||||| Sbjct 6990845 GGTTTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 6990880 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| || || || ||||| ||||| || || || | |||||| Sbjct 14991284 ACGGAGGACGAGATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACC 14991225 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || ||||||||||| | || | | ||||| ||||| || ||||| || || Sbjct 14991224 ATCCTCAAGCTGTTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTT 14991165 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || ||| | || | ||||| || || ||||| || || || Sbjct 14991164 GTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGCTCTCCACTTCCAGTGTGAT 14991105 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||| || ||||| |||||||| Sbjct 14991104 GGTCTTCCCGGTCAAGGTCTTGACAAAGATCTGCAT 14991069 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||||| ||||| || || || || || ||||| || || || | ||| ||| Sbjct 14990828 ACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGACC 14990769 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || || || ||| | ||||| || ||||| ||||| || ||||||||||| Sbjct 14990768 ATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCTTT 14990709 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || | || | ||||| || ||| ||||| | || || Sbjct 14990708 GTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGCTTTCAACTTCCAAGGTGAT 14990649 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | ||||| || || |||||||| Sbjct 14990648 TGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 14990613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || |||||||| || || ||||| || || || | ||| || ||| Sbjct 14990140 AGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCC 14990081 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | || || || || | || | || ||||||||||| ||||| ||||| ||||| Sbjct 14990080 TCCAACTGCTTTCCGGCGAAGATAAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTGTCC 14990021 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || || || | || | |||||||| ||| || || || || ||||| Sbjct 14990020 TGGATCTTGGCCTTAACGTTGTCGATTGTGTCAGAGCTTTCCACCTCGAGGGTGATAGTC 14989961 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | || ||||| || |||||||| Sbjct 14989960 TTTCCGGTGAGAGTCTTAACGAAGATCTGCAT 14989929 >seq2 Length=14066726 Score = 138 bits (152), Expect = 9e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || || ||||| || || || || |||||||| | ||| || ||| Sbjct 7053622 AGAACCAAGTGGAGAGTTGATTCCTTCTGTATATTGTAATCCGCCAAGGTACGTCCATCC 7053681 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || || ||||| || ||| | |||||||||||||||||||| || || || || ||||| Sbjct 7053682 TCAAGCTGTTTACCGGCAAAGATCAATCTTTGCTGATCCGGAGGGATCCCTTCCTTGTCC 7053741 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || ||| |||| || ||| | || | ||||||||| ||||| |||||||| || || Sbjct 7053742 TG-AATCTTTGCCTTAACATTGTCGATAGTGTCAGAGCTCTCTACCTCAAGAGTAATGGT 7053800 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| | ||||| || || || ||||| Sbjct 7053801 CTTGCCAGTAAGTGTTTTCACGAAAATTTGCAT 7053833 Score = 136 bits (150), Expect = 3e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| ||| | ||||| || ||||||||||| ||||| |||||||||| |||||| Sbjct 7052934 ACGCAACACAAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCCGCAAGTGTGCGACC 7052993 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || ||||| |||||| | || | ||| ||||| || || || || ||||| || Sbjct 7052994 ATCCTCAAGCTGTTTTCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCCTT 7053053 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| || | ||||||| | || | ||||| ||| || || || | ||||| Sbjct 7053054 ATCCTG-AATCTTAGCTTTGACATTATCGATTGTGTCTGAACTCTCAACCTCCAAAGTTA 7053112 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | ||| || ||||| |||||||| Sbjct 7053113 TGGTCTTTCCTGTGAGGGTCTTCACAAAAATCTGCAT 7053149 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| ||||| | ||| || || || || ||||| ||||| ||||| ||| Sbjct 7053379 CCACCTCTGAGACGAAGCACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGCA 7053438 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || | || || |||||| | || | || ||||||||||| ||| Sbjct 7053439 AGTGTGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGA 7053498 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| || ||| || | ||| ||| | || | ||| ||||| || || Sbjct 7053499 ATCCCTTCCTTGTCCTG-AATCTTAGCTTTAACATTGTCAATAGTATCAGAGCTCTCAAC 7053557 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || ||||| || || || || || ||||| |||||||| Sbjct 7053558 CTCCAAAGTAATGGTTTTTCCTGTCAACGTCTTCACAAAGATCTGCAT 7053605 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || || ||||| ||||| ||||||||||| || | || ||| Sbjct 7052706 ACGAAGAACCAAGTGGAGAGTTGATTCCTTTTGGATGTTATAATCAGCCAAAGTCCGACC 7052765 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || ||||| |||||| | || | ||| ||||| || || || || |||||||| Sbjct 7052766 ATCCTCAAGCTGTTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCTTT 7052825 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || | ||||| | || | ||||| || || || || | || | Sbjct 7052826 GTCCTG-AATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTCTCAACCTCCAAGGTAA 7052884 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| || || || || ||||| ||||| || ||||| Sbjct 7052885 TAGTCTTACCTGTCAATGTTTTCACAAAGATTTGCAT 7052921 >seq1 Length=19566579 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| |||| ||| ||||||||||||||||| || ||||| || ||||| || || || Sbjct 8289972 CCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCG 8289913 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | || || || ||||| || || | |||| | ||||| ||||| || Sbjct 8289912 AGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGG 8289853 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || ||| ||| | || | ||||| || ||||| Sbjct 8289852 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCTACC 8289793 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || ||||| || || || ||||||||||| ||||| ||||||||||| Sbjct 8289792 TCTAGGGTTATTGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCATTTT 8289743 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| || || || | ||||| || |||||||| || ||||| ||||| | | Sbjct 19037212 CCACCTCTCAGTCGAAGTACAAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAATCTGAA 19037153 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| ||||| || ||||| ||| |||| | ||| || || || || | Sbjct 19037152 AGCGTTCGACCATCTTCGAGCTGCTTGCCTGCAAATATGAGTCTCTGTTGGTCTGGTTGG 19037093 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| ||| || | ||| ||| | || | ||||| ||| || || Sbjct 19037092 ATCCCTTCCTTGTCTTG-AATCTTAGCTTTAACATTGTCAATGGTGTCTGAACTCTCGAC 19037034 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || ||||| || || | ||| || || ||||||||||| Sbjct 19037033 TTCTAGGGTAATGGTTTTACCGGTAAGGGTCTTGACGAATATCTGCAT 19036986 Score = 105 bits (116), Expect = 5e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | | || ||||| ||||| || || ||||| || || || ||||| ||| Sbjct 10960128 CCACCCCTGAGCCTCAAGACCAAGTGAAGTGTCGACTCTTTCTGGATATTGTAATCAGCA 10960187 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| ||||||||||| |||||| |||||| || || |||||||| || Sbjct 10960188 AGTGTTCGACCATCTTCGAGTTGTTTCCCAGCAAATATCAGCCTCTGTTGATCCGGTGGT 10960247 Query 29680 ATACCCTCTTTGTCTTGT 29697 || ||||||||||| ||| Sbjct 10960248 ATTCCCTCTTTGTCCTGT 10960265 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || || ||||| || ||||| |||||||| | ||| || Sbjct 19038113 ACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGGATGTTGTAATCCGCTAAAGTGTGACC 19038054 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||| || || || ||| | | | || || || ||||| | || || ||||| Sbjct 19038053 ATCTTCGAGCTGCTTCCCTGCAAAGTTAAGCCTCTGTTGGTCCGGGTGGATCCCTTCTTT 19037994 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| | || || ||| | || | || ||| | ||| || ||||| || | Sbjct 19037993 GTCCTG-AATCTGTGCCTTCACATTGTCAATCGTATCAAAGCTTTCCACCTCAAGCGTGA 19037935 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | || || || ||||||||||||||||| Sbjct 19037934 TGGTGCTTCCCGTCAAATCCTTAACAAATATCTGCAT 19037898 >seq7 Length=17303919 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| | || ||||| || || || || || |||||||| || || || || Sbjct 14232561 CCACCTCTCAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGAATATTGTAGTCAGCC 14232620 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || ||||| ||||| ||| | || | || ||||| ||||| | | Sbjct 14232621 AATGTACGACCATCTTCAAGTTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCCGGAGTA 14232680 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || ||||| | || |||||| | || | |||||||| ||| || Sbjct 14232681 ATACCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCAATCGTGTCAGAGCTTTCAACC 14232740 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| || || || || | || |||||||| |||||||| Sbjct 14232741 TCAAGAGTTATGGTCTTCCCGGTAAGAGTCTTAACAAAGATCTGCAT 14232787 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | |||||| || || || || || ||||| ||||| || | || ||| Sbjct 14231888 ACGAAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCCAAAGTACGACC 14231947 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||||||||| || ||| | || | ||| ||||| ||||| | || || || || Sbjct 14231948 GTCCTCGAGTTGTTTACCTGCAAAAATAAGTCTCTGCTGGTCCGGAGTGATGCCTTCCTT 14232007 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || || ||| | || | ||||||||| ||| || ||||||||||| Sbjct 14232008 ATCTTGGATCTTCGCCTTCACATTGTCAATCGTGTCAGAACTTTCGACCTCAAGAGTTAT 14232067 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| |||||||| || ||||| Sbjct 14232068 GGTCTTGCCCGTAAGGGTCTTAACAAAGATTTGCAT 14232103 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || || ||||| || || || ||||| |||| || ||| Sbjct 14231204 ACGAAGAACAAGGTGAAGAGTAGACTCTTTCTGGATATTGTAATCTGCAAGTGTTCGACC 14231263 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| ||||||||||| || ||| | || | ||| ||||| ||||| | || || ||||| Sbjct 14231264 ATCTTCGAGTTGTTTACCGGCAAAGATTAGTCTCTGCTGGTCCGGTGTGATCCCTTCTTT 14231323 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | || || | || | || ||||| || || || ||||| | Sbjct 14231324 GTCTTG-AATCTTGGCCTTCACGTTATCAATCGTATCAGAGCTCTCGACCTCTAGAGTGA 14231382 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| || || || || ||||| |||||||| Sbjct 14231383 TGGTTTTGCCCGTCAAAGTCTTGACAAAAATCTGCAT 14231419 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAAT--CTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || ||||| ||||| ||| | || | | || ||||| ||||| || || || || | Sbjct 13466261 TCCTCAAGTTGCTTGCCCGCAAAGATAAGTTTCTCTGCTGGTCCGGAGGGATCCCTTCCT 13466202 Query 29690 TGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 |||||| | ||||| | |||||| | || | |||||||| || ||||| | ||| Sbjct 13466201 TGTCTT-TGATTTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCAACTTCTATAGTA 13466143 Query 29749 ATAGTTTTGCCAGTTAAGGTTTT 29771 || ||||||||||||| |||||| Sbjct 13466142 ATCGTTTTGCCAGTTAGGGTTTT 13466120 >seq4 Length=14994381 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || || ||||| || ||||| ||||| || | ||| || ||| |||||||| Sbjct 9871022 ATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAGGTTCGGCCATCTTCGAGTTG 9870963 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699 || |||||| | || | ||||| ||||| || || |||||||||||||| || || Sbjct 9870962 CTTACCAGCAAAGATGAGCCTTTGTTGATCAGGTGGTATACCCTCTTTGTCCTGAAA 9870906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385215570873993