Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 seq7 89.7 5e-13 seq4 86.0 6e-12 >seq6 Length=16577294 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| |||||| | ||| ||||| | || || ||||| || |||||||||||| | Sbjct 6990882 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 6990941 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| || |||||||| || |||||| | |||||| || ||||| Sbjct 6990942 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 6991001 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| || ||| || | | || | ||||| | | || || Sbjct 6991002 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCGACC 6991061 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| ||| | ||||| || || | |||||| ||||| |||||||| Sbjct 6991062 TCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| ||||||| || || ||||| || ||||||||||| || || | ||||| Sbjct 8339186 AACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCCAAGGTACGGCCATCTTC 8339127 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 || ||||||||||| |||||| | ||||||||| ||||| |||||||| ||||| Sbjct 8339126 TAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTG 8339067 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 || || || | | || | ||||| | | || || || | ||| | ||||| Sbjct 8339066 GATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTT 8339007 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| || | |||||| ||||| |||||||| Sbjct 8339006 GCCAGTGAGTGTTTTCACGAAAATTTGCAT 8338977 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| || || | ||| || || | || || || || || ||||||||||| | Sbjct 735565 CCACCTCTCAACCGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCC 735624 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | |||||||| ||||||||||| |||| | | |||||||| ||||| Sbjct 735625 AAGGTACGGCCATCTTCGAGCTGTTTACCAGCGAAGATTAATCTCTGCTGATCCGGAGGA 735684 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||| ||||| || ||| || | | || | ||||||| | || || Sbjct 735685 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGAGCTCTCGACC 735744 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | |||||||| || | |||||| || || |||||||| Sbjct 735745 TCGAGAGTGATGGTCTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 735791 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 ||||| |||||||| ||||||||||| | || | |||||| || ||||| || Sbjct 6990228 GTAGACTCTTTTTGGATGTTGTAATCAGCGAGGGTACGTCCGTCTTCAAGCTGTTTCCCG 6990287 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 ||| |||| || | ||||| || || || || ||||| ||||| ||| ||| || Sbjct 6990288 GCAAAGATGAGTCTCTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGAATCTTTGCCTTG 6990347 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | || | ||||||| | || || || | ||| | ||||||||||| | || Sbjct 6990348 ACGTTATCGATTGTGTCTGAGCTCTCAACCTCCAAAGTGATAGTCTTGCCGGTTAGGGTC 6990407 Query 137395 TTTACGAATATTTGCATA 137412 ||||| || || |||||| Sbjct 6990408 TTTACAAAAATCTGCATA 6990425 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCT 137243 || || || | |||||| || | |||| || || || || || ||||||||||| ||| Sbjct 8339659 CCACCACGAAGACGCAACACAAGGTGAAGGGTTGACTCCTTCTGAATGTTGTAATCCGCT 8339600 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||||| || || || ||||||||||| |||| || | ||| || || || || Sbjct 8339599 -AGTGTGCGACCATCCTCAAGCTGTTTACCAGCGAAGATGAGTCTTTGTTGGTCTGGTGG 8339541 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || ||| || || | | || | ||||||| | || || Sbjct 8339540 GATCCCTTCCTTTTCCTGAATCTTAGCCTTGACGTTATCAATTGTGTCTGAGCTCTCAAC 8339481 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | || | |||||||| ||||| || || || || ||||||||| Sbjct 8339480 TTCCAAGGTGATAGTCTTGCCAGTCAAAGTCTTCACAAAAATTTGCATA 8339432 >seq7 Length=17303919 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| ||||| | || || || || || ||||||||||| | Sbjct 14231648 GCCACCACGAAGACGAAGAACCAAATGCAGAGTTGACTCCTTCTGGATGTTGTAATC-CG 14231706 Query 137244 CATTGTGCTCGAG--TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 || ||| ||| || |||||||| || || ||| |||| || ||||| || || ||| Sbjct 14231707 CAA-GTGTCCGACCATCCTCGAGTTGCTTGCCCGCAAAGATAAGTCGTTGTTGGTCCGGA 14231765 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || ||||| ||||| || || ||| | | || | ||||| | | || Sbjct 14231766 GGGATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTCTCA 14231825 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| | ||| | || |||||||| | ||||| || ||||||||||| Sbjct 14231826 ACTTCTAGAGTAATGGTTTTGCCGGTGAGAGTTTTCACAAATATTTGCAT 14231875 >seq4 Length=14994381 Score = 86.0 bits (94), Expect = 6e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 ||| || | ||||| ||||| ||||| || ||||||||||| || || | || Sbjct 9871031 CAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCCAAGGTTCGGCCATC 9870972 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||||||||| ||||||||| |||| || | ||| ||||| || ||||| || |||||||| Sbjct 9870971 TTCGAGTTGCTTACCAGCAAAGATGAGCCTTTGTTGATCAGGTGGTATACCCTCTTTGTC 9870912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488539279443600