Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_024486.1 Length=43734 Score E Sequences producing significant alignments: (Bits) Value seq5 82.4 2e-11 >seq5 Length=13709650 Score = 82.4 bits (90), Expect = 2e-11 Identities = 171/254 (67%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 1377 TACGGCAGAATAGCTCCAAGATCCGGTCTAGCGGCAAAGTATTCAATTGATGTGGGCGCT 1436 |||| ||||||||||| ||||| ||| | || || |||| || ||||| || ||| Sbjct 7382282 TACGCAAGAATAGCTCCGAGATCTGGTTTGGCTTGGAAACATTCGATCGATGTTGGAGCT 7382223 Query 1437 GGAGTTATTGACCCTGATTATCGTGGAAGTATCAGTGTTGTTTTATTTAATCATTCGGAT 1496 || || ||||| ||||||| | ||| | |||| |||| ||||||||||| ||| Sbjct 7382222 GGTGTGATTGATGCTGATTACAGAGGACCCGTTGGTGTGATTTTGTTTAATCATTCTGAT 7382163 Query 1497 GTGCCTTTCCATGTGTCGAGGGGAGACAGAATAGCTCAGTTAATTTGTGAGCGGGCAGCC 1556 || ||| ||||| | ||| || |||| || ||||| ||| ||| | | Sbjct 7382162 GTTGAGTTCGATGTGAAGTTGGGTGATCGAATCGCGCAGTTGATTATCGAGAAGATTGTG 7382103 Query 1557 ACACCAATTTTGGTGGAGGTTGCCGACATAGATAATAACACTGCTCGGGGCACTAGAGGA 1616 || || | | |||||||||| || | ||| || |||| ||| || | || Sbjct 7382102 ACTCCTGATGTTGTGGAGGTTGAAGATTTGGATGAT---ACTGTTCGTGGTGAAGGTGGC 7382046 Query 1617 TTTGGATCTACTGG 1630 ||||| |||||||| Sbjct 7382045 TTTGGCTCTACTGG 7382032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139825916473696