Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 8e-15 >seq5 Length=13709650 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/188 (72%), Gaps = 5/188 (3%) Strand=Plus/Minus Query 131801 AAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGAT-TCCGCTAATTTTTCTACAAG 131859 |||||||| | ||||| || |||||||| | | ||| || | | ||| || | | Sbjct 2138392 AAGAAAGCTCAGTGGGCGATGAAATGGATCGACG--GATCTCAG--ACCTTTGCTGAACG 2138337 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTT 131919 | | || ||||| ||||||||||||||||| ||||| || || ||||| | ||||| Sbjct 2138336 AATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTCTGCTCCATCTT 2138277 Query 131920 TTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAG 131979 ||||||||||| || ||| | |||||||| | | || || || |||| ||||| | Sbjct 2138276 CTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAATTGATCTCTCG 2138217 Query 131980 AGATGAAG 131987 ||| |||| Sbjct 2138216 AGACGAAG 2138209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186801045731853