Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 138 7e-28 seq2 107 1e-18 seq6 102 5e-17 seq5 102 5e-17 seq4 102 5e-17 >seq1 Length=19566579 Score = 138 bits (152), Expect = 7e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||||| ||| | ||||||||| || || |||||| || |||||||| |||| Sbjct 8289974 CACCTCCTCTCAGACGGAGCACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGG 8289915 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 |||||| | |||| |||| ||||| ||||| || |||| ||||||||| || | | Sbjct 8289914 CGAGTGTTCTCCCGTCTTCCAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTG 8289855 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| ||||| ||| ||| | ||||| ||| || Sbjct 8289854 GGATCCCTTCCTTGTCTTGGATCTTCGCTTTCA-CATTGTCGATCGTGTCTGATGACTCT 8289796 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || ||||| ||||| |||||||||||||| Sbjct 8289795 ACCTCTAGGGTTATTGTCTTCCCCGTTAAGGTTTTCACAAAGATCTGCAT 8289746 >seq2 Length=14066726 Score = 107 bits (118), Expect = 1e-18 Identities = 166/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | ||| | ||| | ||| ||||| ||| ||||| ||||||||||| | Sbjct 7053378 ACCACCTCTGAGACGAAGCACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGC 7053437 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || || || || || ||||| || | | ||||||||| | || Sbjct 7053438 AAGTGTGCGACCATCCTCTAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGG 7053497 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||| || | || ||||| ||| | || || ||| | Sbjct 7053498 AATCCCTTCCTTGTCCTGAATCTT-AGCTTTAACATTGTCAATAGTATCAGAGCT---CT 7053553 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || ||||| ||||| ||||| || ||||||||||||||| Sbjct 7053554 CAACCTCCAAAGTAATGGTTTTTCCTGTCAACGTCTTCACAAAGATCTGCATA 7053606 >seq6 Length=16577294 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| ||||| | |||||||| || ||| |||||| || ||||||||||||| Sbjct 6990881 ACCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGC 6990940 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | ||||| ||||| || ||||| | ||||| || | || Sbjct 6990941 CAAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGG 6991000 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| || || || | ||||| ||| | |||||| ||| | Sbjct 6991001 AATGCCTTCCTTGTCCTGGATCTT-TGCCTTAACATTGTCGATGGTGTCAGAGCT---CT 6991056 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || ||||| || | ||||| || || || ||||| Sbjct 6991057 CGACCTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||||||||| || ||| |||||| || ||||||||||| | Sbjct 6990425 ACCACCTCTCAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGC 6990484 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || || | || || |||||||| || | | ||||||||| | || Sbjct 6990485 CAAGGTGCGACCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGG 6990544 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | || ||||| || || || | || |||| ||| | ||| || ||| | Sbjct 6990545 GATTCCCTCTTTATCTTGGATCTT-AGCTTTGACATTGTCAATGGTATCTGAGCT---CT 6990600 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| |||||||| || | || || ||||||||||||||| Sbjct 6990601 CAACCTCTAGGGTGATTGTTTTACCAGTGAGAGTCTTCACAAAGATCTGCATA 6990653 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||| | ||| || || ||||||||| ||||||||||| | Sbjct 6990197 ACCACCACGGAGACGAAGCACGAGATGCAGGGTAGACTCTTTTTGGATGTTGTAATCAGC 6990256 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || ||| |||| || | ||||| |||||||| || | | |||||| ||| | || Sbjct 6990257 GAGGGTACGTCCGTCTTCAAGCTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGG 6990316 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||||| ||||| ||| || || | || | || | ||||| ||| | Sbjct 6990317 GATCCCTTCCTTGTCTTGAATCTT-TGCCTTGACGTTATCGATTGTGTCTGAGCT---CT 6990372 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| || || || |||| || |||||||| ||||||||| Sbjct 6990373 CAACCTCCAAAGTGATAGTCTTGCCGGTTAGGGTCTTTACAAAAATCTGCATA 6990425 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || ||||| || || || ||| || || |||||||| |||| Sbjct 14990840 ACCACCACGTAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGC 14990781 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||| || ||||||||||| ||||| | |||||| || | || Sbjct 14990780 CAAGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGG 14990721 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| |||||||| || || ||| || | ||| | |||||| ||| || Sbjct 14990720 GATACCCTCTTTGTCCTGGATCTTGGCCTTC-ACGTTGTCGATGGTGTCCGAGCT---TT 14990665 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| || || || || | ||||| || |||||||||||| Sbjct 14990664 CAACTTCCAAGGTGATTGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCATA 14990612 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||||||||| || ||| |||||| || |||||||| || | Sbjct 735336 ACCACCTCTCAGACGAAGCACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGC 735395 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| || | || || | || || |||||||| || | | ||| || || | || Sbjct 735396 TAGTGTACGGCCATCCTCTAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGG 735455 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | |||||| ||||| || || || | || | ||| | ||||| ||| | Sbjct 735456 GATACCTTCCTTGTCCTGGATCTT-TGCCTTGACGTTGTCGATAGTGTCAGAGCT---CT 735511 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | ||||| || || || || | || || ||||||||||||||| Sbjct 735512 CAACCTCGAGGGTGATGGTCTTGCCGGTGAGAGTCTTGACAAAGATCTGCATA 735564 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || || || || || |||||||| | Sbjct 8339432 ACCACCACGGAGACGAAGAACCAAGTGAAGGGTTGATTCCTTCTGGATATTGTAATCCGC 8339373 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || || |||||||| |||||||| || | | ||||||||| | || Sbjct 8339372 AAGTGTGCGACCATCCTCTAATTGTTTACCGGCAAAGATAAGTCTCTGCTGATCCGGTGG 8339313 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGAT---T 33697 | || ||||| || || || || ||||| |||| ||||| ||| | Sbjct 8339312 GATTCCCTCTTTATCCTGGATCTTAGCCTT-AACATTGTCAATAGTGTC---TGAACTCT 8339257 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || |||| ||||| ||||| || || || || || ||||||||||||||| Sbjct 8339256 CAACCTCAAGGGTGATGGTTTTGCCAGTCAAAGTCTTCACAAAGATCTGCATA 8339204 >seq5 Length=13709650 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||||| ||| || || || || || |||||||| |||| Sbjct 13270600 CACCACCACGGAGACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGG 13270541 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 || ||||| |||| |||| || || ||||| || ||||| |||||||| || | | Sbjct 13270540 CCAGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTG 13270481 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| || ||| ||||| ||| ||| | ||||| || ||| Sbjct 13270480 GGATCCCTTCCTTGTCTTGGATCTTCGCTTTCA-CATTGTCGATCGTGTCTGACGACTCC 13270422 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || |||| ||||| || ||||||||||| Sbjct 13270421 ACCTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 13270372 >seq4 Length=14994381 Score = 102 bits (112), Expect = 5e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| |||| | || ||| |||| || | || |||||||| || Sbjct 14616789 CTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 14616730 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||||| |||||||| || |||| | ||||| ||||| || || |||| ||| Sbjct 14616729 AATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCA-CAT 14616671 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| ||| || || || | |||||||| || || |||| ||||| | Sbjct 14616670 TGTCGATGGTGTCAGATGACTCTACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCA 14616611 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 14616610 CGAAGATCTGCAT 14616598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328700903300160