Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 4e-14 >seq6 Length=16577294 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| || | |||||| || | | | ||||| || || |||||||| || || |||||| Sbjct 735573 CAACCGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACG 735632 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||||||||||||||| | |||||| | ||| ||||| ||||| |||||||| Sbjct 735633 GCCATCTTCGAGCTGTTTACCAGCGAAGATTAATCTCTGCTGATCCGGAGGAATGCCTTC 735692 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || ||| |||| | || | || || | ||| || |||| || Sbjct 735693 CTTGTCCTGGATCTTTGCCTTCACATTGTCGATGGTGTCTGAGCTCTCGACCTCGAGAGT 735752 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||| || ||||| | ||||| ||||| Sbjct 735753 GATGGTCTTGCCAGTTAGTGTTTTCACAAAAATTTGCAT 735791 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | | |||||||| || |||||||| || || ||| || ||| || Sbjct 6990444 ACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCCAAGGTGCGACCATCCTCT 6990503 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| ||||||| | |||| || | ||| ||||| || || || || |||||||| Sbjct 6990504 AGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGGATTCCCTCTTTATCTTGG 6990563 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || ||| | | || | ||||| | ||| || || | || | |||||| Sbjct 6990564 ATCTTAGCTTTGACATTGTCAATGGTATCTGAGCTCTCAACCTCTAGGGTGATTGTTTTA 6990623 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || | || |||||||| Sbjct 6990624 CCAGTGAGAGTCTTCACAAAGATCTGCAT 6990652 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | ||||||||| | | | |||||||| || |||||||| ||| || ||| || Sbjct 6990891 AAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCCAAGGTGCGG 6990950 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||||||||||| |||| | | || || || ||||| |||||||| Sbjct 6990951 CCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGAATGCCTTCC 6991010 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 || || || ||| || | | || | || || | ||| || || | || Sbjct 6991011 TTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTCTCGACCTCAAGAGTG 6991070 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || |||||||| || ||||| | |||||| ||||| Sbjct 6991071 ATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | |||||||||| || |||||||| || || |||||| |||||| Sbjct 8339186 AACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCCAAGGTACGGCCATCTTC 8339127 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||||| | |||| | | || ||||| ||||| |||||||| || || Sbjct 8339126 TAGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTG 8339067 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | | || | || || | ||| || |||| || | || || Sbjct 8339066 GATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTCTCAACCTCGAGAGTGATGGTCTT 8339007 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | |||||| ||||| Sbjct 8339006 GCCAGTGAGTGTTTTCACGAAAATTTGCAT 8338977 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||||||| | | | |||||||| || ||||||||||| ||| | ||||| ||| || Sbjct 735355 ACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCT-AGTGTACGGCCATCCTC 735413 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||| ||||||| | |||| || | |||||| || ||||| || ||||| || || Sbjct 735414 TAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGGATACCTTCCTTGTCCTG 735473 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||| || | | || | ||| || | ||| || |||| || | || || Sbjct 735474 GATCTTTGCCTTGACGTTGTCGATAGTGTCAGAGCTCTCAACCTCGAGGGTGATGGTCTT 735533 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || | || |||||||| Sbjct 735534 GCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476606594744280