Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5 208 1e-47 >seq5 Length=13709650 Score = 208 bits (230), Expect = 1e-47 Identities = 391/565 (69%), Gaps = 16/565 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| |||| ||||| | ||| ||||| |||||| | |||| |||| || ||||| Sbjct 2138763 TGTTCCCAATCCACTACCCACAGATCTGGGAGATGTACAAGAAAG-CCGAAGCATCCTTC 2138705 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGC 1455869 |||||||| || || || || ||| |||| | | |||| | || | | Sbjct 2138704 TGGACCGCTGAAGAAGTAGATCTCTCACAAGACAACCGCGATTGGGAGAACAGTCTCAAC 2138645 Query 1455870 GACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCAT 1455929 |||| ||| || || |||||||| ||||||||||| ||| ||||| || ||| || || Sbjct 2138644 GACGGCGAACGTCACTTCATCAAACACGTCCTCGC-TTTCTTCGCTGCATCCGACGGAAT 2138586 Query 1455930 CGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTT 1455989 ||| ||||| || || || || ||| || |||||| | | ||||| ||| Sbjct 2138585 CGTTTTAGAGAATCTCGCTTCTCGGTTCATGTCCGATGTCCAAGTCTCGGAGGCGCGTGC 2138526 Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 || ||||| ||||||||||| || || || || || ||||| | || || || | Sbjct 2138525 TTTCTACGGTTTCCAGATCGCGATTGAGAATATTCATTCTGAGATGTATAGTCTTCTTCT 2138466 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 ||| || ||| |||| || |||| ||||| ||||| ||||| || || ||| | Sbjct 2138465 CGATACTTACATCAAAGATAACAAAGAGAGAGACCATCTCTTCCGCGCGATTGAGACGAT 2138406 Query 1456110 GCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTC-G 1456168 || | || ||| || || | ||||||||||| |||||| || || ||| | Sbjct 2138405 TCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGAC-----GGATCTCAG 2138351 Query 1456169 ACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 || |||||| || || |||| | || || | || || || ||||| ||||| || || Sbjct 2138350 AC-CTTTGCTGAACGAATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAG 2138292 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGC- 1456286 |||||| ||||||| ||||| ||||| || || |||||||| || | |||| | Sbjct 2138291 CTTCTGCTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGG--GTTAACTTTCTCA 2138234 Query 1456287 AACGAATTTATCAGTCGCGACGAAG 1456311 |||||||| ||| ||| ||||||| Sbjct 2138233 AACGAATTGATCTCTCGAGACGAAG 2138209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177736642729226