Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6 136 4e-27 seq5 134 1e-26 seq4 131 2e-25 seq1 120 3e-22 seq2 105 6e-18 seq7 100 3e-16 >seq6 Length=16577294 Score = 136 bits (150), Expect = 4e-27 Identities = 171/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | | ||| ||||| || | ||| ||||||||| |||||||| || ||| Sbjct 14990611 CCTCCACGCAGACGCAAGACCAAGTGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCC 14990552 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||||| |||| |||| |||||| || ||||| ||||||| ||||||||||| || Sbjct 14990551 AAGGTTCTGCCGTCCTCCAACTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGG 14990492 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||| |||||| |||||| ||||| |||| | | ||||| ||| || Sbjct 14990491 ATACCCTCTTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCAGAACTC---TC 14990436 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| ||||| || || || ||||| || || ||||| || ||||| Sbjct 14990435 CACCTCCAAGGTGATAGTCTTCCCGGTCAACGTCTTGACAAAGATTTGCAT 14990385 Score = 136 bits (150), Expect = 4e-27 Identities = 171/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||||| | ||| ||||| || | || |||||| || |||||||| |||||| Sbjct 14990839 CCACCACGTAGACGCAAGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAGTCGGCC 14990780 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || |||| |||||| || ||||| ||||||| ||||||||||| || Sbjct 14990779 AAGGTACGACCATCCTCCAACTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGG 14990720 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||| |||||| |||||| ||||| |||| | | ||||| ||| ||| Sbjct 14990719 ATACCCTCTTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGCT---TTC 14990664 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||||| || || || || | ||||||||| || |||||||| Sbjct 14990663 AACTTCCAAGGTGATTGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 14990613 Score = 123 bits (136), Expect = 2e-23 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||| | | |||||||| | || ||| || || ||||||||||||||| Sbjct 6990882 CCACCTCTTAAACGGAGAACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCGGCC 6990941 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || ||||| ||||| || || ||||| | |||||||||| |||| Sbjct 6990942 AAGGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAATCTTTGCTGGTCCGGAGGA 6991001 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | || ||||||||| ||||||| ||| | | | | | ||||| |||| || Sbjct 6991002 ATGCCTTCCTTGTCCTGGATCTTTGCCTTAACATTGTCGATGGTGTCAGAGCTC---TCG 6991058 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || ||||| || | |||||||| || || ||||| Sbjct 6991059 ACCTCAAGAGTGATGGTCTTACCAGTGAGTGTTTTCACGAAAATTTGCAT 6991108 Score = 118 bits (130), Expect = 1e-21 Identities = 144/195 (74%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| |||||||| || | || || ||||| ||||| || || Sbjct 735600 CTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCGAGCTGTTTACCAGCGAA 735659 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || || | |||||| |||| ||||| || ||||||||| ||||||| ||||| | | Sbjct 735660 GATTAATCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATT 735719 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| || ||||| | ||||| || || || || | ||||| Sbjct 735720 GTCGATGGTGTCTGAGCTC---TCGACCTCGAGAGTGATGGTCTTGCCAGTTAGTGTTTT 735776 Query 35722 CACAAATATCTGCAT 35736 |||||| || ||||| Sbjct 735777 CACAAAAATTTGCAT 735791 Score = 118 bits (130), Expect = 1e-21 Identities = 167/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | |||||| || | || |||||| || |||||||| || ||| Sbjct 14991067 CCACCACGGAGCCTTAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 14991008 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || ||||| || || || || || | ||||||||||| | |||| Sbjct 14991007 AAGGTGCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGA 14990948 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||||| ||| |||||| ||||| |||| | | ||||| ||| || Sbjct 14990947 ATACCTTCCTTATCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCAGAACTC---TC 14990892 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| ||||| || || || ||||| || || ||||| |||||||| Sbjct 14990891 CACCTCCAAGGTGATAGTCTTCCCGGTCAAGGTCTTGACAAAGATCTGCAT 14990841 Score = 111 bits (122), Expect = 1e-19 Identities = 144/195 (74%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || |||| || || |||| || |||||||| || || || Sbjct 2562646 TCCTTCTGAATGTTGTAGTCTGCCAGTGTGCGACCGTCCTCAAGCTGCTTTCCAGCGAAG 2562705 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||||| ||| | || ||||| ||| |||||| ||||| ||| Sbjct 2562706 ATGAGACGCTGCTGGTCCGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCA-CGTT 2562764 Query 35666 G-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | | ||||| |||| || ||||| | ||||| || || || ||||| || || Sbjct 2562765 GTCAATGGTGTCGGAGCTC---TCAACCTCAAGGGTGATGGTCTTCCCGGTCAACGTCTT 2562821 Query 35722 CACAAATATCTGCAT 35736 |||||| |||||||| Sbjct 2562822 CACAAAAATCTGCAT 2562836 Score = 109 bits (120), Expect = 5e-19 Identities = 169/236 (72%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | ||||| || | || ||||| ||||||||||| || ||| Sbjct 2563522 CCACCACGAAGCCTGAGGACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCC 2563581 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || || |||||||| || ||||| || | || ||||| |||| ||| Sbjct 2563582 AAGGTACGGCCATCTTCGAGCTGCTTTCCGGCAAAGATAAGCCTTTGCTGATCCGGAGGG 2563641 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||||||||| |||| || || | | |||| | | ||||| ||| ||| Sbjct 2563642 ATACCTTCCTTGTCCTGGATC-TTGGCCTTAACGTTGTCGATTGTGTCAGAGCT---TTC 2563697 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTGT 35741 |||||| | ||||| || || || || | ||| || ||||| ||||||| ||||| Sbjct 2563698 CACCTCGAGGGTGATAGTCTTCCCGGTGAGAGTCTTAACAAAGATCTGCA-TCTGT 2563752 Score = 109 bits (120), Expect = 5e-19 Identities = 144/196 (73%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||||||||| | ||||| |||| || || ||||| || || || Sbjct 14990348 CTCCTTCTGGATGTTGTAATCGGCAAGGGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAA 14990289 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||||| ||||||||||| ||| | | ||||||||| |||| || |||| | || Sbjct 14990288 GATCAACCTCTGCTGGTCCGGAGGGATACCCTCCTTGTCTTGGATC-TTGGCTTTAACGT 14990230 Query 35665 TG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 || | | ||||| ||| |||||||| | || ||||| || || || | |||| Sbjct 14990229 TGTCGATGGTGTCAGAACTC---TCCACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTT 14990173 Query 35721 TCACAAATATCTGCAT 35736 | || || |||||||| Sbjct 14990172 TGACGAAAATCTGCAT 14990157 Score = 109 bits (120), Expect = 5e-19 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| |||||||| || ||||| || || | || || ||||| || || || || Sbjct 14991260 CTCCTTTTGGATGTTGTAGTCAGCCAAAGTGCGACCATCCTCAAGCTGTTTGCCAGCGAA 14991201 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| ||| | | ||||||||| |||||| ||||| | | Sbjct 14991200 GATGAGACGCTGCTGGTCCGGAGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATT 14991141 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| ||||| |||| ||||| || || || ||||| || || Sbjct 14991140 GTCAATGGTGTCGGAGCTC---TCCACTTCCAGTGTGATGGTCTTCCCGGTCAAGGTCTT 14991084 Query 35722 CACAAATATCTGCAT 35736 ||||| |||||||| Sbjct 14991083 GACAAAGATCTGCAT 14991069 Score = 104 bits (114), Expect = 2e-17 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| | || ||| || || ||||||||||| |||||||| || | || || Sbjct 8339185 ACCAAATGAAGGGTTGACTCTTTCTGGATGTTGTAATCTGCCAAGGTACGGCCATCTTCT 8339126 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||| ||||| || || ||||| | ||||| |||| ||||| || ||||||||| | Sbjct 8339125 AGCTGTTTACCAGCGAAGATCAATCTTTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGG 8339066 Query 35648 ATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTT 35704 ||||| ||| | | | | | ||||| |||| || ||||| | ||||| || Sbjct 8339065 ATCTTCGCCTTAACATTGTCAATGGTGTCAGAGCTC---TCAACCTCGAGAGTGATGGTC 8339009 Query 35705 TTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | |||||||| || || ||||| Sbjct 8339008 TTGCCAGTGAGTGTTTTCACGAAAATTTGCAT 8338977 Score = 102 bits (112), Expect = 7e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || ||| || || ||||||||||| |||||||| || | || || Sbjct 6990443 CACCAAATGGAGGGTGGACTCTTTCTGGATGTTGTAATCAGCCAAGGTGCGACCATCCTC 6990502 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||||| ||||| || | || |||||| |||| || | | ||| || || Sbjct 6990503 TAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGATCCGGTGGGATTCCCTCTTTATCTTG 6990562 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGT 35703 |||||| || | | | | | || || |||| || ||||| | ||||| || Sbjct 6990563 GATCTTAGCTTTGACATTGTCAATGGTATCTGAGCTC---TCAACCTCTAGGGTGATTGT 6990619 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||| || | ||| |||||||| |||||||| Sbjct 6990620 TTTACCAGTGAGAGTCTTCACAAAGATCTGCAT 6990652 Score = 98.7 bits (108), Expect = 9e-16 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | ||||| || | || |||||| || ||||||||||| | Sbjct 8339889 TTCCACCACGAAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCTG 8339830 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || || | || || ||||| || || || || || | | ||||||||||| || Sbjct 8339829 CCAGTGTCCGACCATCCTCAAGCTGTTTTCCAGCGAAGATGAGTCTCTGCTGGTCCGGAG 8339770 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGAT 35683 | | | |||||||| ||||| ||| | |||| | | ||||| |||| Sbjct 8339769 GGATCCCTTCCTTGTCTTGTATCTTGGCCTTGA-CGTTGTCAATGGTGTCTGAGCTC--- 8339714 Query 35684 TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||||| |||||| || || || |||||||| |||||||| || ||||| Sbjct 8339713 TCAACCTCCAACGTGATAGTCTTGCCTGTCAAAGTCTTCACAAAGATTTGCAT 8339661 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || ||| || || |||||||| || || | || || | || || Sbjct 735354 CACCAAATGAAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCTAGTGTACGGCCATCCTC 735413 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||||| ||||| || | || ||| ||||||| ||| | | ||||||||| Sbjct 735414 TAGCTGCTTACCGGCAAAGATAAGCCTCTGTTGGTCCGGAGGGATACCTTCCTTGTCCTG 735473 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCG 35702 ||||||| ||| | |||| | | ||||| |||| || ||||| | ||||| | Sbjct 735474 GATCTTTGCCTTGA-CGTTGTCGATAGTGTCAGAGCTC---TCAACCTCGAGGGTGATGG 735529 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || || | ||| || ||||| |||||||| Sbjct 735530 TCTTGCCGGTGAGAGTCTTGACAAAGATCTGCAT 735563 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | || | ||| | || |||||| || |||||||| || ||| Sbjct 2562838 CCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 2562897 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || ||||| || || || || || | || ||||||||||| ||| Sbjct 2562898 AATGTGCGACCATCCTCAAGCTGTTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGAGGG 2562957 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | ||||||||| |||||| ||||| | | | ||||| |||| || Sbjct 2562958 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTATCAATGGTGTCTGAGCTC---TCA 2563014 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| || || || || || || | ||| || ||||| |||||||| Sbjct 2563015 ACCTCCAAGGTTATTGTCTTGCCGGTGAGAGTCTTGACAAAAATCTGCAT 2563064 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||| || | ||| |||||| || ||||||||||| || Sbjct 735109 CCACCACGGAGACGAAGCACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCCGCT 735168 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || || |||||||| || || || || | | ||||||||| | || Sbjct 735169 AGGGTGCGTCCATCTTCGAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 735228 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | ||||||||| ||| || |||| |||| | | ||||| |||| || Sbjct 735229 ATCCCTTCCTTGTCC-TGAATCTTGGCTTTGACGTTGTCGATTGTGTCAGAGCTC---TC 735284 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| ||||| || || || || | || || ||||| |||||||| Sbjct 735285 CACCTCCAAAGTGATGGTCTTGCCGGTTAGGGTCTTGACAAAAATCTGCAT 735335 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||| | || | ||| | || |||||| || |||||||| || ||| Sbjct 2563294 CCACCACGGAGCCTGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCC 2563353 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | |||| || || ||||| || || || |||| || ||||||||||| || Sbjct 2563354 AAAGTCCTGCCGTCCTCGAGTTGCTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGGGG 2563413 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTC 35685 | | |||||| ||| |||| || || | | |||| | | ||||| ||| || Sbjct 2563414 ATTCCCTCCTTATCCTGGATC-TTGGCCTTAACGTTGTCGATGGTGTCAGAACTC---TC 2563469 Query 35686 CACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||||||| ||||| || || || |||| || || || || || ||||| Sbjct 2563470 CACCTCCAAAGTGATAGTCTTTCCGGTCAGCGTCTTGACGAAGATTTGCAT 2563520 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||| || ||||| || || | || | |||| || |||||||| ||||| || Sbjct 6990689 CTCCTTTTGGATATTGTAGTCAGCAAGAGTCCTTCCGTCTTCAAGCTGCTTGCCCGCGAA 6990748 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||| | || ||||||||||| || | | ||| || || |||||| || | | | Sbjct 6990749 TATAAGCCTCTGCTGGTCCGGTGGGATTCCCTCTTTATCTTGGATCTTGGCTTTGACATT 6990808 Query 35665 TGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTT 35721 | | ||||| |||| || ||||| | ||||| ||||| || ||||| || || Sbjct 6990809 GTCAATGGTGTCTGAGCTC---TCAACCTCGAGGGTGATGGTTTTGCCAGTCAAGGTCTT 6990865 Query 35722 CACAAATATCTGCAT 35736 |||||| |||||||| Sbjct 6990866 CACAAAGATCTGCAT 6990880 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/233 (69%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | ||||| || | || |||||| || ||||||||||| | Sbjct 734879 TTCCACCACGAAGACGAAGGACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCG 734938 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | | ||| || | || || |||||||| || || || || | | ||||||||| | | Sbjct 734939 CTAGGGTGCGTCCATCTTCGAGCTGCTTCCCAGCGAAGATGAGTCTCTGCTGGTCTGGTG 734998 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGAT 35683 | | | ||||||||| ||| ||| |||| |||| | | ||||| |||| Sbjct 734999 GGATCCCTTCCTTGTCC-TGAATTTTAGCTTTGACGTTGTCGATTGTGTCTGAGCTC--- 735054 Query 35684 TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||||| ||||| || || || || | || |||||||| || ||||| Sbjct 735055 TCAACCTCCAAAGTGATGGTCTTTCCGGTGAGGGTCTTCACAAAGATTTGCAT 735107 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||| | ||| | ||| ||| ||||| ||||||||||| || Sbjct 6990198 CCACCACGGAGACGAAGCACGAGATGCAGGGTAGACTCTTTTTGGATGTTGTAATCAGCG 6990257 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || |||| || ||||| || || ||||| || | | ||||||||| | || Sbjct 6990258 AGGGTACGTCCGTCTTCAAGCTGTTTCCCGGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 6990317 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||||| |||||| ||| | | | | ||||| |||| || Sbjct 6990318 ATCCCTTCCTTGTCTTGAATCTTTGCCTTGACGTTATCGATTGTGTCTGAGCTC---TCA 6990374 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| ||||| || || || || | || || ||||| |||||||| Sbjct 6990375 ACCTCCAAAGTGATAGTCTTGCCGGTTAGGGTCTTTACAAAAATCTGCAT 6990424 >seq5 Length=13709650 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| ||| | ||| ||||| || |||||||| |||||| Sbjct 13270598 CCACCACGGAGACGGAGCACCAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCC 13270539 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| ||||||||||| || || |||||||||||||||||||||| || Sbjct 13270538 AGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCGAATATCAACCGCTGCTGGTCCGGTGGG 13270479 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||| |||||| |||| | | | | |||||| ||| |||||| Sbjct 13270478 ATCCCTTCCTTGTCTTGGATCTTCGCTTTCACATTGTCGATCGTGTCTGACGACTCCACC 13270419 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || || ||||| | |||||||| || |||||||| Sbjct 13270418 TCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 13270372 >seq4 Length=14994381 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||| |||||||| |||| || |||||||| || || || Sbjct 14616789 CTCCTTCTGGATGTTGTAGTCGGCTAAGGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAA 14616730 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||||| || | | ||||||||| |||||| ||||| | | Sbjct 14616729 AATCAATCGCTGCTGGTCCGGCGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATT 14616670 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || ||||| | |||||||| || ||||| | |||||||| Sbjct 14616669 GTCGATGGTGTCAGATGACTCTACCTCGAGGGTGATCGTCTTCCCCGTTAGGGTTTTCAC 14616610 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 14616609 GAAGATCTGCAT 14616598 >seq1 Length=19566579 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | ||| ||| || || |||||||| ||||| | |||| | |||| || Sbjct 8289955 CACCAAATGAAGCGTCGACTCTTTCTGGATGTTGTAGTCGGCGAGTGTTCTCCCGTCTTC 8289896 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 |||||| || || || || |||| ||||||||||||| || | | |||||||| Sbjct 8289895 CAGCTGTTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCTTG 8289836 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| |||| | | | | |||||| || || ||||| | || || || || Sbjct 8289835 GATCTTCGCTTTCACATTGTCGATCGTGTCTGATGACTCTACCTCTAGGGTTATTGTCTT 8289776 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 ||||| || ||||||||||| ||||||||| Sbjct 8289775 CCCCGTTAAGGTTTTCACAAAGATCTGCATT 8289745 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || ||||||||||| || || || | | || || |||||||| || ||||| Sbjct 19038089 CTCTTTCTGGATGTTGTAATCCGCTAAAGTGTGACCATCTTCGAGCTGCTTCCCTGCAAA 19038030 Query 35605 TATCAACCGCTGCTGGTCCGAA-GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 | | || ||| ||||||| ||| | || || |||||| |||| | ||||| | Sbjct 19038029 GTTAAGCCTCTGTTGGTCCGGGTGGATCCCT-TCTTTGTCCTGAATCTGTGCCTTCACAT 19037971 Query 35664 TTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 | | | ||| || ||| ||||||||| | |||||| || | ||||||||| | Sbjct 19037970 TGTCAATCGTATCAAAGCT---TTCCACCTCAAGCGTGATGGTGCTTCCCGTCAAATCCT 19037914 Query 35721 TCACAAATATCTGCAT 35736 | |||||||||||||| Sbjct 19037913 TAACAAATATCTGCAT 19037898 >seq2 Length=14066726 Score = 105 bits (116), Expect = 6e-18 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||| | ||| | ||| ||||||||| ||||||||||| || | || || | || || Sbjct 7053396 CACAAGATGGAGAGTAGACTCCTTTTGGATGTTGTAATCAGCAAGTGTGCGACCATCCTC 7053455 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 | ||||||||| ||||| || | || |||||| |||| ||||| | ||||||||| | Sbjct 7053456 TAACTGCTTACCAGCAAAGATAAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCC-T 7053514 Query 35647 GATCTTTTGCTTCAGAGTTG-CCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCG 35702 || || |||| | ||| | | || || |||| || ||||||| || || | Sbjct 7053515 GAATCTTAGCTTTAACATTGTCAATAGTATCAGAGCTC---TCAACCTCCAAAGTAATGG 7053571 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || ||||| || |||||||| |||||||| Sbjct 7053572 TTTTTCCTGTCAACGTCTTCACAAAGATCTGCAT 7053605 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| ||||| ||||| ||||| || || | || || ||||| || || ||||| Sbjct 7052731 TCCTTTTGGATGTTATAATCAGCCAAAGTCCGACCATCCTCAAGCTGTTTCCCAGCAAAG 7052790 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | | ||||||||| | || | | ||| |||||| ||||| ||| | | Sbjct 7052791 ATGAGTCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCCTGAATCTTAGCCTTGACGTTA 7052850 Query 35666 GCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTC 35722 | | ||||| |||| || ||||||| || || || ||||| ||||| |||||| Sbjct 7052851 TCAATTGTGTCTGAGCTC---TCAACCTCCAAGGTAATAGTCTTACCTGTCAATGTTTTC 7052907 Query 35723 ACAAATATCTGCAT 35736 ||||| || ||||| Sbjct 7052908 ACAAAGATTTGCAT 7052921 >seq7 Length=17303919 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||||| | ||||| |||| || |||||||||||| ||||| || ||| Sbjct 14232561 CCACCTCTCAACCTAAGAACCAAGTGTAGAGTTGACTCCTTTTGAATATTGTAGTCAGCC 14232620 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || || || ||||| || ||||| || | || ||||||||||| || | Sbjct 14232621 AATGTACGACCATCTTCAAGTTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCCGGAGTA 14232680 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | ||||| || |||||| ||| | | | | | |||||| ||| ||| Sbjct 14232681 ATACCTTCCTTATCTTGGATCTTAGCCTTGACATTGTCAATCGTGTCAGAGCT---TTCA 14232737 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | || || || || || || | ||| || ||||| |||||||| Sbjct 14232738 ACCTCAAGAGTTATGGTCTTCCCGGTAAGAGTCTTAACAAAGATCTGCAT 14232787 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| ||||| || || |||| || || || ||||| ||||| Sbjct 14231912 CTCCTTCTGGATGTTGTAATCAGCCAAAGTACGACCGTCCTCGAGTTGTTTACCTGCAAA 14231971 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | | ||||||||||| || | || ||||| || |||||| ||||| | | Sbjct 14231972 AATAAGTCTCTGCTGGTCCGGAGTGATGCCTTCCTTATCTTGGATCTTCGCCTTCACATT 14232031 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| ||| ||||| | || || || || ||||| | || || || Sbjct 14232032 GTCAATCGTGTCAGAACTTTCGACCTCAAGAGTTATGGTCTTGCCCGTAAGGGTCTTAAC 14232091 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 14232092 AAAGATTTGCAT 14232103 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | |||||||| | || |||||| || ||||||||||| || Sbjct 14231649 CCACCACGAAGACGAAGAACCAAATGCAGAGTTGACTCCTTCTGGATGTTGTAATCCGCA 14231708 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || || ||||| |||||||| || | || || ||||||| ||| Sbjct 14231709 AGTGTCCGACCATCCTCGAGTTGCTTGCCCGCAAAGATAAGTCGTTGTTGGTCCGGAGGG 14231768 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTC---GCTCGATTCC 35686 | | |||||||| |||||| || | | | | | ||||| |||| || Sbjct 14231769 ATCCCTTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATGGTGTCAGAGCTC---TCA 14231825 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | || || ||||| || || | ||||||||||||||| ||||| Sbjct 14231826 ACTTCTAGAGTAATGGTTTTGCCGGTGAGAGTTTTCACAAATATTTGCAT 14231875 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || || |||||||| || | ||||| | || || || || ||||| ||||| Sbjct 14231228 CTCTTTCTGGATATTGTAATCTGCAAGTGTTCGACCATCTTCGAGTTGTTTACCGGCAAA 14231287 Query 35605 TATCAACCGCTGCTGGTCCGAAG-GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 || | | ||||||||||| | || | || || ||||| ||||| ||||| Sbjct 14231288 GATTAGTCTCTGCTGGTCCGGTGTGATCCCT-TCTTTGTCTTGAATCTTGGCCTTCACGT 14231346 Query 35664 TTGCCACCGTGTC---GCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTT 35720 | | | ||| || |||| || ||||| | ||||| ||||| ||||||||||| | Sbjct 14231347 TATCAATCGTATCAGAGCTC---TCGACCTCTAGAGTGATGGTTTTGCCCGTCAAAGTCT 14231403 Query 35721 TCACAAATATCTGCAT 35736 | ||||| |||||||| Sbjct 14231404 TGACAAAAATCTGCAT 14231419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450789244206840