Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq6 437 1e-117 seq2 109 6e-19 >seq6 Length=16577294 Score = 437 bits (484), Expect = 1e-117 Identities = 535/722 (74%), Gaps = 10/722 (1%) Strand=Plus/Minus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | ||||||||||| | | || ||||| || ||||| ||||||||||| Sbjct 1968806 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 1968747 Query 159439 CTCCTACTTCTTCCCAC-TGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTT 159497 || | || |||||| ||| ||| | || | || |||||| | || || || || || Sbjct 1968746 CTATTGCT-CTTCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTT 1968688 Query 159498 TATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCT 159557 | | || ||||| || || || | ||||||||||| | |||||| |||||| | Sbjct 1968687 TGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTT 1968628 Query 159558 CACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 159617 || || || || || || |||||| || | | | |||||| | | |||| ||||| Sbjct 1968627 AACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGG 1968568 Query 159618 TCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGT 159677 |||||| | ||||| || || || ||||| ||| | || || | ||| | ||||| Sbjct 1968567 TCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTGT 1968508 Query 159678 TGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG 159737 |||||||||||| || ||||| | |||||||||||| |||| || |||||| ||||||| Sbjct 1968507 TGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTCG 1968448 Query 159738 -TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 159796 ||| ||| | || ||||| ||||| || || ||||||||||| ||||||||||||| Sbjct 1968447 ATCT-GTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTG 1968389 Query 159797 TCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCG 159856 | || ||||| || |||||||| ||||| ||| ||||||||||| |||||||| | Sbjct 1968388 TTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 1968329 Query 159857 GGGTAGCAGCAATCTTTAGATTC---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACCC 159913 | ||||| || || ||| ||||| || || |||| |||||||| | || ||||| Sbjct 1968328 GTGTAGCGGCTATATTTCGATTCATTCTCTTTTTCCA--AGGGTTTC-ATAATTGGACAT 1968272 Query 159914 TCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAA 159973 | ||||| || |||||||||||||| |||||| |||| || | || ||| | || || | Sbjct 1968271 TGAACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTA 1968212 Query 159974 TCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTA 160033 | ||||||||||||||||| || || || ||||||||||| || ||||| ||||| Sbjct 1968211 TTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCC 1968152 Query 160034 AGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 160093 || ||| | || ||||||| ||||| |||||||| |||||||| || |||||||| | Sbjct 1968151 GTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTT 1968092 Query 160094 GG 160095 || Sbjct 1968091 GG 1968090 >seq2 Length=14066726 Score = 109 bits (120), Expect = 6e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 158807 TGACGGCGATCAAGTTATTCAGTGTGAGTCCGATCAGTACATTCTAGACGCTGCAGAAGA 158866 ||| || || |||| || ||||||| ||| ||| |||| |||||||| || || Sbjct 1809329 TGAAGGTGAGCAAGAGGTTGAGTGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGA 1809270 Query 158867 GGCAGGAGTTGATATTAACTATTCCTGTCGTGCTGGTGCCTGTTCTTCCTGTGCTGGTAA 158926 || ||| | ||| | || || || ||||||||| | ||||| |||||||||||| Sbjct 1809269 AGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAA 1809210 Query 158927 ACTTGTCAGCGGAACTGTTGACCAAAGCGATCAGTCATTCTTGGATGATGATCAGATTGC 158986 | |||| ||| |||||||||| || ||| ||| | |||||||| ||||||| Sbjct 1809209 AGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGA 1809150 Query 158987 AGAAGGATTTATCCTTACGTGTGTATCTTATCCCACTTCTGAT 159029 | ||| ||| | || || |||| ||||||| || |||||| Sbjct 1809149 TGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTACCTCTGAT 1809107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573018463155600