Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq6 363 2e-95 seq2 105 7e-18 >seq6 Length=16577294 Score = 363 bits (402), Expect = 2e-95 Identities = 515/719 (72%), Gaps = 4/719 (1%) Strand=Plus/Minus Query 161688 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 161747 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 1968806 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 1968747 Query 161748 CTTCTTCTTCTTCCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTT 161806 || | || |||||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 1968746 CTATTGCT-CTTCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTT 1968688 Query 161807 CGCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCT 161866 | ||| |||||||| ||||| | |||||||||||| | || ||| || ||| | Sbjct 1968687 TGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTT 1968628 Query 161867 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 161925 || || ||||| ||||| ||| | | | | |||||| || || || || |||| Sbjct 1968627 AACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGG 1968569 Query 161926 GTCCTGAGGCTCAAGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTG 161985 ||||||| || ||||| ||||| || ||| ||| | || || || ||| ||||| Sbjct 1968568 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTG 1968509 Query 161986 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 162045 | || ||||| || || ||||| |||| || || ||| | |||||||||||||| || | Sbjct 1968508 TTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTC 1968449 Query 162046 GTCTTATTGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 162105 | | || | || || || ||||| || || ||||||||||| ||||||||||||| Sbjct 1968448 GATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTG 1968389 Query 162106 TCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTG 162165 | |||||||| || || ||| | ||||| || ||||||| || || || |||| Sbjct 1968388 TTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 1968329 Query 162166 GGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGA 162225 | || || || || ||| ||||| | | ||| | ||||| || ||||| ||||| ||| Sbjct 1968328 GTGTAGCGGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTGGACATTGA 1968269 Query 162226 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTC 162285 |||| || |||||||||||||| |||||| |||| || | || || |||| ||||||| Sbjct 1968268 ACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTC 1968209 Query 162286 ACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGG 162345 | || | || || |||||||| |||| || ||||| || ||||| || || | Sbjct 1968208 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 1968149 Query 162346 CGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 162404 | ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||| Sbjct 1968148 CTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 >seq2 Length=14066726 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 161089 TGAAGGTAACCAAGTTGTTCAATGTGAACCAGACCAGTACATTTTAGATGCAGCAGAAGA 161148 ||||||| | |||| ||| | ||||| ||| ||| || | || || || || || Sbjct 1809329 TGAAGGTGAGCAAGAGGTTGAGTGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGA 1809270 Query 161149 GGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCTTGCTCTTCCTGTGCAGGTAA 161208 || ||| | ||| | || ||||| ||||||||| |||| || |||||| ||||| Sbjct 1809269 AGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAA 1809210 Query 161209 AATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTCTTGGATGATGACCAGATTGA 161268 | || | || || | || ||||||||||||||| ||| | |||||||| |||||||| Sbjct 1809209 AGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGA 1809150 Query 161269 ATCTGGATTCCTTTTGACATGTGTTGCATATCCTAC 161304 | || || || | || |||| || |||||||| Sbjct 1809149 TGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 1809114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559498593792600