Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq6 329 4e-85 seq2 96.9 4e-15 >seq6 Length=16577294 Score = 329 bits (364), Expect = 4e-85 Identities = 505/712 (71%), Gaps = 10/712 (1%) Strand=Plus/Minus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | |||| ||||| || ||||| ||||||||||| || | || | Sbjct 1968796 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCT-C 1968738 Query 182431 TTCCCAC-TGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGT 182489 ||||| ||| ||| | || | || |||||| | || || ||| | ||||| || Sbjct 1968737 TTCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCA 1968678 Query 182490 TGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCT 182549 ||||| || || || | ||| ||||||| | |||||| || ||| | || || || Sbjct 1968677 TGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCA 1968618 Query 182550 GTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 182609 || || || |||||| || | | | |||||| | | |||| ||||||||||| | Sbjct 1968617 GTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCA 1968558 Query 182610 CAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCAC 182669 || || |||| || ||||| ||| | || || || ||| ||| || ||||||||| Sbjct 1968557 CAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTGTTGCTCTCCAC 1968498 Query 182670 GGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGG 182728 || || ||||| | || ||||| ||| | | || |||||||||||||| ||| || Sbjct 1968497 GGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTCGATCTG-TTCA 1968439 Query 182729 AATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTT 182788 | | ||||||| ||||| || || || |||||||| |||||||| || || ||| || Sbjct 1968438 ATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTT 1968379 Query 182789 CCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 182848 ||| || ||||| | || || || |||||| || ||||| |||||||| ||||| Sbjct 1968378 CCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGC 1968319 Query 182849 GATCTTCAGGTTC---CTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTT 182905 || || | ||| || || |||| |||||||| | || |||||| | ||||| || Sbjct 1968318 TATATTTCGATTCATTCTCTTTTTCCA--AGGGTTTC-ATAATTGGACATTGAACCCATT 1968262 Query 182906 CCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGT 182965 |||||||||||||| |||||| ||||||| | || ||||| | ||||| ||||||| Sbjct 1968261 TCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGC 1968202 Query 182966 CACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGA 183025 || ||||| ||||| || | ||||||||| || ||||| ||||| || || | Sbjct 1968201 TACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAA 1968142 Query 183026 TTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGG 183077 | ||||| | || || || ||||| ||||| || || || || |||||| Sbjct 1968141 CCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 >seq2 Length=14066726 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 179485 CTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCTGGTGCTTGT 179544 |||||||||||||| ||||| || | ||| | ||||||||| ||||||||| ||||| Sbjct 1809286 CTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTTGT 1809227 Query 179545 TCATCTTGTGCTGGTAAATTAGAGAGTGGATCTGTTGATCAAAGCGATCAATCGTTTTTG 179604 || |||||||||||| | | | |||||||||||| || || || || | Sbjct 1809226 TCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCCTT 1809167 Query 179605 GATGACGATCAAATGGAGTCGGGATTTATTCTGACTTGCGTATCTTATCCTAC 179657 ||||| || || || || | || ||| |||| || || | |||||||||| Sbjct 1809166 GATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 1809114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614611661257440