Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq6 358 7e-94 seq2 98.7 1e-15 >seq6 Length=16577294 Score = 358 bits (396), Expect = 7e-94 Identities = 516/720 (72%), Gaps = 6/720 (1%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | || |||||| | |||| || ||||||||||| || |||||||| Sbjct 1968806 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 1968747 Query 159959 CTTCTTCTTCTTCCCAC-TGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTT 160017 || | || |||||| ||| ||| | ||| | || |||||| | || || ||||| || Sbjct 1968746 CTATTGCT-CTTCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTT 1968688 Query 160018 CGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCT 160077 | ||| |||||||| |||||| | |||||||||||| | || ||| || ||| | Sbjct 1968687 TGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTT 1968628 Query 160078 TACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 160136 || || ||||| ||||| ||| | | | | |||||| || || || || |||| Sbjct 1968627 AACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTGTTACTGTGGG 1968569 Query 160137 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTG 160196 ||||||| || ||||| ||||| | ||| ||| | || || || ||| ||||| Sbjct 1968568 GTCCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTG 1968509 Query 160197 TGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCAC 160256 | || ||||| || || ||||| |||| || || ||| | |||||||||||||| || | Sbjct 1968508 TTGCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTC 1968449 Query 160257 G-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTCTTT 160315 | ||| || | | || ||||| ||||| || || ||||||||||| |||||||| ||| Sbjct 1968448 GATCTGTTCAAT-TGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTT 1968390 Query 160316 GTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 160375 || || ||||| || || ||| | ||||| || ||||||| || || || ||| Sbjct 1968389 GTTTCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTT 1968330 Query 160376 GGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTT 160435 || || || || || ||| ||||| | | || | ||||| ||||| || ||||| | Sbjct 1968329 GGTGTAGCGGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTGGACATTG 1968270 Query 160436 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATC 160495 ||||| || |||||||||||||| |||||| |||| || | || ||||| | || || Sbjct 1968269 AACCCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATT 1968210 Query 160496 CATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAG 160555 ||||| | ||||||||| || || | | ||||||||| || |||||||| || Sbjct 1968209 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 1968150 Query 160556 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 160615 || ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||| Sbjct 1968149 GCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 >seq2 Length=14066726 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 159546 TACATTTTAGACGCTGCTGAGGAAGCAGGTGTAGATGCTCCGTATTCATGTCGTGCTGGT 159605 ||| || | ||||||||||||||||| || | ||| || || || || ||||||||| Sbjct 1809292 TACGTTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 1809233 Query 159606 GCTTGTAGCACATGTGCTGGTAAGATTGAGAGCGGGACAGTTGACCAAAGTGACCAATCT 159665 ||||| | ||||||||||| ||| | || | |||||||| |||||| | Sbjct 1809232 TCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGT 1809173 Query 159666 TTCTTGGACGATGATCAACTCGCTGAAGGATTTCTTCTCACTTGTGTCTCCTACCCTACA 159725 ||| | || ||||| || | | || ||| ||| ||||||| |||| | | || ||||| Sbjct 1809172 TTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTACC 1809113 Query 159726 TCAGACGTAACTAT 159739 || || || || || Sbjct 1809112 TCTGATGTTACCAT 1809099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552468261723840