Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq6 360 2e-94 seq2 91.5 2e-13 >seq6 Length=16577294 Score = 360 bits (398), Expect = 2e-94 Identities = 494/688 (72%), Gaps = 2/688 (0%) Strand=Plus/Minus Query 180051 GACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTCTTCCCAC-TGCTTATCTTGC 180109 |||||||| || ||||| || |||||||| ||| | || |||||| ||| ||| | || Sbjct 1968776 GACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCT-CTTCCCTTGTGCCTATTTCGC 1968718 Query 180110 CATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCACGGTCTTGC 180169 | || |||||| | || || ||| | ||||| || ||||| || || || | || Sbjct 1968717 TTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCATGGTATACTCATGGATTGGC 1968658 Query 180170 TTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGC 180229 | ||||||| | |||||| || ||| | || || || || || || |||||| | Sbjct 1968657 TAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAGTTTCTACTCCTGCTAATAG 1968598 Query 180230 TATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAACGGTG 180289 | | | |||||| | | |||| ||||||||||| | || || |||| || || Sbjct 1968597 TTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAAGGAGATTTTACTCGTTG 1968538 Query 180290 GTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGG 180349 ||| ||| | || || || ||| ||| || ||||||||||| || ||||| |||| || Sbjct 1968537 GTGTCAATTAGGTGGTCTGTGGGCTTTTGTTGCTCTCCACGGCGCTTTCGCATTAATAGG 1968478 Query 180350 ATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTATCCGTCCTTACAATGCTAT 180409 |||||| |||| ||||||||||| || || | || | || ||||| ||||| || Sbjct 1968477 TTTTATGTTACGTCAGTTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAAT 1968418 Query 180410 TGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCA 180469 |||||||||||||| || ||||| ||||| || || || || || ||||| ||||| Sbjct 1968417 CGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTCCTAATTTATCCACTAGGTCA 1968358 Query 180470 GTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTT 180529 || ||||||||||||| || |||||| ||||| || || ||| ||||| | ||||| Sbjct 1968357 ATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATTCTCTT 1968298 Query 180530 TCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTAT 180589 | | || || || || || ||||| | ||||| || |||||||||||||| |||||| | Sbjct 1968297 TTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCATATGATGGGAGTCGCTGGTGT 1968238 Query 180590 ACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGA 180649 ||| || | || |||||| || || ||||| | ||||| || || || | | ||| Sbjct 1968237 ACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGA 1968178 Query 180650 AGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTA 180709 |||||| || ||||| || || || ||| | |||| |||| || |||||||| Sbjct 1968177 AGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTA 1968118 Query 180710 CTCTATGGTCACTGCAAACCGCTTCTGG 180737 || |||||||| || |||||||| ||| Sbjct 1968117 TTCAATGGTCACCGCTAACCGCTTTTGG 1968090 >seq2 Length=14066726 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 177375 TGTGAAGACGATCAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTAC 177434 ||||| ||||| ||| | || ||||| ||||| ||||| || | ||| | |||| Sbjct 1809307 TGTGACGACGACGTCTACGTTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTAC 1809248 Query 177435 TCATGCCGCGCTGGTGCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGAT 177494 || ||||| |||||| ||||||| ||||||||||||| ||| | ||| ||| || Sbjct 1809247 TCTTGCCGTGCTGGTTCTTGTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGAC 1809188 Query 177495 CAAAGCGATCAATCGTTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGT 177554 || || || ||| | ||||| || || || || |||| ||| |||| |||||| Sbjct 1809187 CAGTCTGACCAGAGTTTCCTTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGT 1809128 Query 177555 GTGTCATATCCCACC 177569 | | ||||| ||| Sbjct 1809127 GCCGCTTATCCTACC 1809113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610323702690240