Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5 152 7e-32 seq4 122 1e-22 seq7 118 1e-21 >seq5 Length=13709650 Score = 152 bits (168), Expect = 7e-32 Identities = 396/596 (66%), Gaps = 7/596 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| |||||||| || |||| ||| || |||| | || |||||||| || || || | Sbjct 2138186 GCACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAA 2138245 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 |||||||| || || || || || ||||| || |||| |||| ||| | || || |||| Sbjct 2138246 CCCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGG-AGCAGAAGCTTCCGGAGAAGA 2138304 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTA-TGT 39793 |||| ||||| || || || ||||| | || || | || | | || | Sbjct 2138305 AGATACCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCA-AAGGTCTGAGATCCGTCG 2138363 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| ||| ||||| | |||||||||| || ||||| || || || || || Sbjct 2138364 ATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGCGG 2138423 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 ||||||| | | | || | ||||||| | || ||||| | | ||||||||||| Sbjct 2138424 AAGAGATGGTCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGAAGAAGACTATACATC 2138483 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || ||||| || || |||||||| ||||| || ||||| ||| | || || | | | Sbjct 2138484 TCAGAATGAATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACT 2138543 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 || || || || || | || | ||| || || ||||| || || || Sbjct 2138544 TGGACATCGGACATGAACCGAGAAGCGAGATTCTCTAAAACGATTCCGTCGGATGCAGCG 2138603 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGTGTCAAT-TTATTCCAG 40090 || || || | || ||||| || || | ||| || | || | | || | ||| Sbjct 2138604 AAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCCCAA 2138663 Query 40091 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTT 40150 || | | |||| ||| | ||||||||||||||| ||||| || || || || || || Sbjct 2138664 TCGCGGTTGTCTTGTGAGAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCTTTC 2138723 Query 40151 TTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGG 40206 |||||||| | ||| || | | || || ||||| || ||| ||||| | ||| Sbjct 2138724 TTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 2138779 >seq4 Length=14994381 Score = 122 bits (134), Expect = 1e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| |||||| Sbjct 294909 TCCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACC 294850 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||| ||| ||| |||||||| |||| ||||||||| || || Sbjct 294849 GTTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGA 294790 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| || || || || ||| || | |||||| ||| | ||| |||||||| Sbjct 294789 AACACCAATACCGCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATAT 294730 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 || || |||||||||||| ||||| | ||||| ||||| Sbjct 294729 GCCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 294688 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| || || || | |||||||| || ||||| |||||| | | ||| | || || | Sbjct 294563 GTTCCAGCGTTGAAAAGAGTAGGAGACGCATGAGTAAACCATCTCTGAGACATCAAATGG 294504 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||| | || || || || ||||| || ||||| || | || || | ||||| | Sbjct 294503 TATGTCTGGATTGCGGAATCAATATCATCCTTGTGAATGCCAACAGCTACCCTCATCAGC 294444 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | || || ||| | | ||| || ||||||||| | || ||| Sbjct 294443 ATGTGTTGAGGCCTCTCAACAACTTTCCCTTGGACTTTTAAGAGGTATGATCTCTCAAGA 294384 Query 70171 GTTTTAAACCCAAA 70184 |||||||| || || Sbjct 294383 GTTTTAAATCCGAA 294370 >seq7 Length=17303919 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| || || | || | ||||| | ||| | || | |||||| |||| ||||| Sbjct 446571 TCCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACCCGCAGCATTGGAACGATACC 446512 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| || ||||| ||| ||| |||||||| |||| || || || || || Sbjct 446511 ATTAGATGCTCCGTTTGTGCCACGAATGTAACTTCCAGTTGCACGGATGTTGTGAACTGA 446452 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| || || ||||| ||| || | |||||| |||||| ||||||||||| Sbjct 446451 TACACCAATACCCCCTGCTGATTTGCTTATAACAGCACACTCTTTCAACGTGTCATATAT 446392 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| ||||||||||| ||||| | ||||| |||||| Sbjct 446391 TCCCTCGATGCTATCATCCTTCATGCAGATCAGAAAGCAGCTA 446349 Score = 86.0 bits (94), Expect = 9e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || | ||| || | ||||||||||| |||||||||||| | ||| | | || | Sbjct 446239 GTCCCTGAATTGAAGAGAGTAGGAGATGCATGAGTGAACCATCGCTGAGACATTAAATGG 446180 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || || | || || || || ||||| || || || || | | || | ||||| | Sbjct 446179 TACGTATTGATTGCGGAATCAATATCATCCTTGTGGATGCCAACAGAAACCCTCATCAGC 446120 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 || || ||||| | ||| ||| ||| | || ||| || || |||||| |||| || Sbjct 446119 ATGTGTTGAGGCCTTTCAACCACTTTGCCTTGTACTTTTAAGAGATATGATCTTTCAAGC 446060 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 |||||||| ||||| || | ||| ||| || | || |||| ||| Sbjct 446059 GTTTTAAATCCAAAGTAATCATATTCAAAATCGCGATCATAAACAAT 446013 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 69081 AAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATT 69140 ||| |||||||||||||| | || || || || ||||| || || ||||||| | | || Sbjct 447827 AAGGATAAATGCATCTGCAAGACCTTGTACACCTATACCAATGGGCCTATGTCGCATGTT 447768 Query 69141 TGAACTTTCAGC-TTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 ||| ||| || ||| || |||||||| ||| | |||||||||||| |||||||| Sbjct 447767 TGAGGTTTTTGCAGTCTCCAA-AGGATAATGATTCACATCTATAATTTTGTTAAGATT 447711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686902162743720