Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5 127 2e-24 >seq5 Length=13709650 Score = 127 bits (140), Expect = 2e-24 Identities = 239/345 (69%), Gaps = 10/345 (3%) Strand=Plus/Minus Query 43942 tttttATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGAT 44001 ||| || || || || || || || || ||||||||||| || ||||| |||||||| | Sbjct 2138525 TTTCTACGGTTTCCAGATCGCGATTGAGAATATTCATTCTGAGATGTATAGTCTTCTTCT 2138466 Query 44002 AGATACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTAATGCGATAGAAAC 44058 ||||| |||||||||||| | |||| | |||| | || ||||| || || Sbjct 2138465 CGATACTTACATCAAAGATAACAAAGAGAGAGACCATC---TCTTCCGCGCGATTGAGAC 2138409 Query 44059 AGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATT 44117 | ||| ||| | | ||||| | ||||| | |||||||| | | | | Sbjct 2138408 GATTCCTTGCGTCGCGA-AGAAAGCTCAGTGGGCGATGAAATGGATCGACGGATCTCAGA 2138350 Query 44118 CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGT 44177 | |||| |||||| | || || || || ||| ||||| || ||||| || ||| | Sbjct 2138349 CCTTTGCTGAACGAATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCT 2138290 Query 44178 T-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 | ||| |||| || ||| | ||||||||||| | ||||||||||| || || ||||| Sbjct 2138289 TCTGCT-CCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAAC 2138231 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 || || || ||| || ||||||||||| ||||| || || ||| Sbjct 2138230 GAATTGATCTCTCGAGACGAAGGCTTACACTGCGACTTCGCGTGC 2138186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452255591865