Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 5e-13 >seq5 Length=13709650 Score = 91.5 bits (100), Expect = 5e-13 Identities = 132/184 (72%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 443692 ATCTCAG--CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAG 443749 ||||||| ||| | || ||| | || ||||| ||| || ||||| | || || Sbjct 2138357 ATCTCAGACCTTTGCTGAACGAATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTC 2138298 Query 443750 CGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCT 443809 ||| ||||| || |||||||||||| | || || || ||||| |||| || | || | Sbjct 2138297 CGGAAGCTTCTGC-TCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTT 2138239 Query 443810 TTAGTAACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCT 443869 | |||||| ||||| ||| ||||| || || || ||||||||||| || ||| ||| Sbjct 2138238 TCTCAAACGAATTGATCTCTCGAGACGAAGGCTTACACTGCGACTTCGCGTGCCTTATCT 2138179 Query 443870 ACAC 443873 |||| Sbjct 2138178 ACAC 2138175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588320269020985