Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5 105 8e-18 seq8 87.8 2e-12 seq1 86.0 8e-12 >seq5 Length=13709650 Score = 105 bits (116), Expect = 8e-18 Identities = 183/262 (70%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 || ||||| || ||||| | ||| || ||||| | || |||||||| || || ||| Sbjct 2138208 CCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAACCCAGGCATGAGTCCTCGTTTC 2138267 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | |||||| || | || || || ||||||||||| || || ||||| ||||| Sbjct 2138268 TTAAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATACCTTCAACACAAGCGAAA 2138327 Query 130154 GCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGC 130213 |||| || || |||||||||| | || | || | ||| |||||||||||||| Sbjct 2138328 GCAACGATTCGTTCAGCAAAGGTCTGAGA---TCCGTCGATCCATTTCATCGCCCACTGA 2138384 Query 130214 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT-TCT-TTTCTG 130271 || || ||| ||| || || | |||| ||||| ||||| | | ||| | | || Sbjct 2138385 GCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGCGGAAGAGATGGTCTCTCTCTTTG 2138444 Query 130272 ATGGATCTTTGATGTACTTATC 130293 | |||||||||||| |||| Sbjct 2138445 TT--ATCTTTGATGTAAGTATC 2138464 >seq8 Length=13324298 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||||||||| || ||||| || || ||||| | |||||||| || Sbjct 3556070 AAATCCATCCATCTCAGTCAAAAGCTGATTAATCGTCTGTTCCCTCTCATCATTTCCA-- 3556127 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | |||| |||| || || ||||| ||||| || || || || Sbjct 3556128 CCTCCCATCCCAGCTCCTCTTTGCCTACCAACAGCATCAATCTCATCAATAAACACAATG 3556187 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || ||||| | ||| | ||||| ||||| ||||| Sbjct 3556188 CAAGG-AGCTTTCGACTTCGCCTTCTCAAACAAATCCCTAACTCTAGACGCACCCACACC 3556246 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 ||||| | ||| ||||| | | || | ||| | ||| || || || ||| || Sbjct 3556247 AACAAAAAGCTCAACAAACTCCGAAGCAGCACAAGAAAAGAACGGCACTCCAGCTTCTCC 3556306 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 || | |||| || | || ||||||||||| || ||| Sbjct 3556307 AGCCACAGCTCTAGCCAAAAGCGTCTTCCCCGTACCCGGT 3556346 >seq1 Length=19566579 Score = 86.0 bits (94), Expect = 8e-12 Identities = 189/279 (68%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| ||||| | ||||| ||||| ||||| | |||||||| | Sbjct 17296151 AAATCCATCCATCTCTGTCAACAACTGATTAATGGTCTGTTCTCTCTCATCATTTCC--T 17296208 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | ||| | || || |||||||| ||||| ||||| || ||| Sbjct 17296209 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCGTCAATCTCATCAATGAATACAATA 17296268 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | ||| || || || || | ||| | ||||| ||||| ||||| Sbjct 17296269 CAAGG-GGCTTTCGACTTAGCCTTCTCGAACAAATCCCTAACTCTAGATGCACCCACACC 17296327 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 ||| || | ||||||||| | | ||| | || || ||| || || | ||| || Sbjct 17296328 CACGAAAAGCTCCACAAACTCTGAGGCCGCGCAAGAGAAGAACGGTACTCCTGCTTCCCC 17296387 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || | || | ||| | ||||||||| ||||| || || Sbjct 17296388 AGCTACAGCCCTGGCCAAGAGGGTCTTACCCGTACCAGG 17296426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618429224369880