Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 4e-13 seq7 82.4 6e-11 >seq3 Length=15040190 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 111721 TGATTTAAATAAACATGCGCATCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCA 111780 |||||| || ||||| ||||| |||||| |||||| || || | ||| | | | Sbjct 12702067 TGATTTCTGTACACATGAGCATCCCCTATAACATGGATAAAATCACCAGGAACGAGATTG 12702126 Query 111781 GTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCT 111840 | || |||| |||| | || || ||| ||| |||||||||||| |||||||| Sbjct 12702127 CACACATGAGCAAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCA 12702186 Query 111841 AGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACATAA 111900 |||||||| ||| | || | |||||| | ||||| || |||| || || |||||| Sbjct 12702187 AGGCCCATGTCTGCTGAACGTTGATACATTTGACACGAGAGTTCCCCTTCTGCCACATAG 12702246 Query 111901 AATTGACAAAG 111911 || || ||||| Sbjct 12702247 AACTG-CAAAG 12702256 >seq7 Length=17303919 Score = 82.4 bits (90), Expect = 6e-11 Identities = 187/280 (67%), Gaps = 5/280 (2%) Strand=Plus/Minus Query 111777 ACCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCAC 111836 |||| || ||| || | ||| |||| || ||| ||| |||||||||||||| || Sbjct 2150043 ACCACAGACGTGAGCCAGAATGCATGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTAC 2149984 Query 111837 ACCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACAC 111896 ||| || |||||||| | || | ||||| | |||||||| |||| | || || Sbjct 2149983 ACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAAC 2149924 Query 111897 ATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATCCCATTCATA----AAGGGTC 111952 |||||| ||| || | || || ||||| | ||||||| |||| | ||||| Sbjct 2149923 ATAAAACTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGGT- 2149865 Query 111953 CCCATGCACACATGATCATCCTTCTGCTGTAGCGATTATGTTCAATGTCGTGTATGACAT 112012 ||| || |||| || || | ||| | |||| | | || | || || |||| Sbjct 2149864 TCCAAGCTGACATTATGATTCGTCTATCATCAGGATTGTTCTTGATTTTGTTAATTACAT 2149805 Query 112013 TCAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTG 112052 |||||||| || | |||| ||||||||||| || || Sbjct 2149804 CTAAGAGCTGATCAAATCCTTGGCCAGTATAATCAGCATG 2149765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391941907504999