Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_028105.1 Length=35159 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 8e-16 >seq1 Length=19566579 Score = 96.9 bits (106), Expect = 8e-16 Identities = 70/80 (88%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 17309 CAGCAAAAAGTGGTAGACGGTCTGGCCTCGGGCATCAACGGGGTGGTGGACCTGGCCAAC 17368 || ||||| |||||||| || |||||||| ||||| | |||||||||||||||||||||| Sbjct 3968811 CAACAAAAGGTGGTAGATGGCCTGGCCTCTGGCATTAGCGGGGTGGTGGACCTGGCCAAC 3968870 Query 17369 CAGGCCGTGCAGAAACAGAT 17388 ||||| ||||| ||| |||| Sbjct 3968871 CAGGCAGTGCA-AAATAGAT 3968889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 112386168355746