Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_028107.1 Length=34064 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 1e-12 >seq1 Length=19566579 Score = 86.0 bits (94), Expect = 1e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 16819 CCAACAAAAAGTGGTGGACGGACTGGCCTCGGGCATCAACGGGGTGGTGGACCTAGCTAA 16878 ||||||||| ||||| || || |||||||| ||||| | ||||||||||||||| || || Sbjct 3968810 CCAACAAAAGGTGGTAGATGGCCTGGCCTCTGGCATTAGCGGGGTGGTGGACCTGGCCAA 3968869 Query 16879 CCAAGCGGTGCAAAA 16893 ||| || |||||||| Sbjct 3968870 CCAGGCAGTGCAAAA 3968884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 108882200520276