Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 87.8 2e-12 >seq5 Length=13709650 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| |||| || | ||||| || || || ||||| ||||||||||| || ||| Sbjct 2138347 TTTGCTGAACGAATCGTTGCTTTCGCTTGTGTTGAAGGTATCTTCTTCTCCGGAAGCTTC 2138288 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || | || |||||||| || || || || |||||||| || | | |||||| ||||| Sbjct 2138287 TGCTCCATCTTCTGGCTTAAGAAACGAGGACTCATGCCTGGGTTAACTTTCTCAAACGAA 2138228 Query 60093 CTGATTTCCCGGGACGAGGGC 60113 |||| || || ||||| ||| Sbjct 2138227 TTGATCTCTCGAGACGAAGGC 2138207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548519499879120