Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 >seq7 Length=17303919 Score = 104 bits (114), Expect = 2e-17 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29950 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 30009 ||||||||||| ||| | || || |||||||| ||| |||||||| ||||| ||||| Sbjct 2150037 GACGTGAGCCAGAATGCATGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTACACCGAG 2149978 Query 30010 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 30069 ||||| || | || | ||| || | ||||| || || ||||| | || ||||| Sbjct 2149977 ACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAA 2149918 Query 30070 CTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30126 ||| | |||| |||||| |||||||| ||||| | || || |||||||| Sbjct 2149917 CTGAGCAAACAT---GTGGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGGTTCCA 2149861 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30168 || ||| ||||| || || || || || |||||| |||| Sbjct 2149860 AGCTGACATTATGATTCGTCTATCATCAGGATTGTTCTTGAT 2149819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406306572175116