Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq6 273 3e-68 >seq6 Length=16577294 Score = 273 bits (302), Expect = 3e-68 Identities = 501/738 (68%), Gaps = 21/738 (3%) Strand=Plus/Minus Query 190796 TTTGATGTGCTTGATGACTGGTTAAAACGTGATAGATTTGTATTCATAGGTTGGTCTGGT 190855 |||||| | | |||||||||||| | || | || || || |||||||||||||| Sbjct 1968806 TTTGATATTATGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGT 1968747 Query 190856 CTTATATTATTACCATGTGCTTTCCTATCAATTGGTGGTTGGTTCACAGGAACTACATTT 190915 || | | || || ||||| | | | | || |||||||||||||| || || ||| Sbjct 1968746 CTATTGCTCTTCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTT 1968687 Query 190916 GTTACTAGTTGGTATACACATGGAATTGCATCTTCATACCTTGAAGGAGCAAACTTTTTG 190975 || ||| |||||||| |||||| | || ||| || | ||||| || ||||| Sbjct 1968686 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTA 1968627 Query 190976 ACAGCAGCAGTATCCACACCTGGTGATGCTATGGGTCATAGTTTATTATTCTTATGGGGT 191035 || || ||||| || || |||| | || | | | ||| ||| || || | |||||| Sbjct 1968626 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGT 1968567 Query 191036 CCAGAGGCACAAGGTTCATTTGTTCGTTGGTTACAAATTGGTGGACTTTGGAACTTTGTA 191095 || || |||||||| ||| |||||||| ||| | ||||| || ||| ||||| Sbjct 1968566 CCTGAAGCACAAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTGTT 1968507 Query 191096 GCACTTCATGGTGTATTTGGTCTCATAGGATTCATGTTACGTCAGTTTGAAATTGCAGGA 191155 || || || || | || | | ||||| || |||||||||||||||||| |||| || Sbjct 1968506 GCTCTCCACGGCGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTCGA 1968447 Query 191156 TTGGTGGGTATTAGACCTTACAATGCTCTTGCTTTTTCTGCTGTCATAGCAGTTTTCACA 191215 | || | ||||||| ||||| | || || |||| | ||| || ||||| Sbjct 1968446 TCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTT 1968387 Query 191216 AGTGTATTCTTAATCTATCCACTTGGTCAGCACAGTTGGTTCTTTGCACCTTCATTTGGA 191275 ||| ||| |||| |||||||| ||||| ||||||||||||| ||| ||||| Sbjct 1968386 TCTGTCTTCCTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 1968327 Query 191276 GTTGCAGCAATCTTTAGATATATTCTATTCATTCAAGGTTTCCACAATATTACACTCAAC 191335 || || || || ||| ||| ||||| || | ||||| || || ||| ||| | ||| Sbjct 1968326 GTAGCGGCTATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAAC 1968267 Query 191336 CCTTTCCACATGATGGGAGTTGCAGGTATTCTAGGTGGAGCATTACTATGTGCCATTCAT 191395 || || || ||||||||||| || ||| | || || | || | ||||| || |||||| Sbjct 1968266 CCATTTCATATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCAT 1968207 Query 191396 GGTGCTACAGTACAGAACACCTTGTATGAGGACTCAAGCATCTATACAGATGGTCAAGTT 191455 |||||||| ||| | || || || | ||| ||||||| | | | Sbjct 1968206 GGTGCTACTGTAGAAAATACTTTATTTGA------------------AGATGGTGATGGT 1968165 Query 191456 CAAAGTACAACCTTTAGAGCATTTGATCCAACACAGGATGAGGAAACTTATTCTATGATC 191515 || |||| || | || ||| | ||||| || | || ||||||||||| ||| || Sbjct 1968164 GCAAATACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTC 1968108 Query 191516 ACTGCAAACAGATTCTGG 191533 || || ||| | || ||| Sbjct 1968107 ACCGCTAACCGCTTTTGG 1968090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631421098834680