Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 8e-16 seq3 91.5 1e-13 >seq7 Length=17303919 Score = 98.7 bits (108), Expect = 8e-16 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 118585 TTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCC 118644 ||||| || ||||| |||||||| || ||||| | ||| |||| ||| || || || || Sbjct 2149994 TTAAATGGTACACCGAGACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCT 2149935 Query 118645 CCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATGGAACTCAGT 118704 || |||||||||||||||||| | ||||| |||||||| || |||| | |||| Sbjct 2149934 CCATTTGCAACATAAAACTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAACTTCAGA 2149875 Query 118705 TGGGCAGGATTCCAGGCTG 118723 | | ||| ||||| |||| Sbjct 2149874 TCAGGAGGGTTCCAAGCTG 2149856 >seq3 Length=15040190 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 118480 TGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCT 118539 ||||| | || |||||||||||||| || ||| || || |||||||| || Sbjct 12702067 TGATTTCTGTACACATGAGCATCCCCTATAACATGGATAAAATCACCAGGAACGAGATTG 12702126 Query 118540 GTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCC 118599 || ||||||| |||| | || | | | |||| || | ||||| || ||||| Sbjct 12702127 CACACATGAGCAAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACACCA 12702186 Query 118600 AGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAA 118659 || |||||||||||||| | || |||| ||| || ||||| ||||| | ||| ||||| Sbjct 12702187 AGGCCCATGTCTGCTGAACGTTGATACATTTGACACGAGAGTTCCCCTTCTGCCACATAG 12702246 Query 118660 AACTG 118664 ||||| Sbjct 12702247 AACTG 12702251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414472895239972