Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq7 84.2 2e-11 >seq7 Length=17303919 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| |||| ||| || | |||| ||| | |||||| || || |||||||||||||| | Sbjct 14232103 TGCCTCCTCTCAACCTAAGAACCAAGTGTAGAGTTGACTCCTTCTGAATATTGTAATCCG 14232162 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| ||| | ||| || | ||| || |||||||| ||||| || || ||||| | Sbjct 14232163 CCAAAGTACGGCCATCCTCAAGTTGCTTCCCCGCATAGATAAGTCTCTGCTGGTCCAGTA 14232222 Query 101130 GCACGCCTTCTTTGTC 101145 | | ||||| ||||| Sbjct 14232223 GGATTCCTTCCTTGTC 14232238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409656940611207