Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq7 100 2e-16 >seq7 Length=17303919 Score = 100 bits (110), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29722 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAG 29781 ||||||||||| ||| | || || |||||||| ||| |||||||| || || ||||| Sbjct 2150037 GACGTGAGCCAGAATGCATGTAAGAAGAGAGTATGAGGCAATGTTAAATGGTACACCGAG 2149978 Query 29782 CCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAA 29841 ||||| || |||| | ||| || | || || || || ||||| | || ||||| Sbjct 2149977 ACCCATATCGGCTGAGCGCTGATACATTTGACATGAAAGTTCTCCATTTGCAACATAAAA 2149918 Query 29842 CTG---ACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCA 29898 ||| | ||||| ||||| |||||||| ||||| | || || |||||||| Sbjct 2149917 CTGAGCAAACATG---TGGCATGGAGGAAGTGCCATCAACTTCAGATCAGGAGGGTTCCA 2149861 Query 29899 GGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 || ||| ||||| || || || || || |||||| |||| Sbjct 2149860 AGCTGACATTATGATTCGTCTATCATCAGGATTGTTCTTGAT 2149819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406159373561878