Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 165 1e-35 seq4 105 9e-18 >seq5 Length=13709650 Score = 165 bits (182), Expect = 1e-35 Identities = 401/599 (67%), Gaps = 15/599 (3%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || || || || || || | ||||| |||| | || |||||||| || || || | Sbjct 2138187 CACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAAC 2138246 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| ||||| ||||| || ||||| || || | ||| ||| || ||||| Sbjct 2138247 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAG 2138306 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--A 48318 || ||||| || || || || | | || || | || | || | | || | Sbjct 2138307 ATACCTTCAACACAAGCGAAAGCA--ACGATTCGTTCAGCAAAGGTCTGAGATCCGTCGA 2138364 Query 48319 TCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 48378 |||| ||||| | ||| |||||| || ||||| || || || || || | Sbjct 2138365 TCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGCGGA 2138424 Query 48379 AGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTT 48438 ||||| || | | || ||| ||||||| | ||||||||| | | |||||||||||| | Sbjct 2138425 AGAGATGGTCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGAAGAAGACTATACATCT 2138484 Query 48439 CGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCT 48498 | || |||||||| ||||| || ||||| || ||||| ||| | ||| || | || | Sbjct 2138485 CAGAATGAATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGACTT 2138544 Query 48499 GTACCTCCGTACA-AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 | || | || ||| || || ||| | |||||| || ||||| || ||||| Sbjct 2138545 GGACAT-CGGACATGAACCGAGAAGCGAGATTCTCTAAAACGATTCCGTCGGATGCAGCG 2138603 Query 48558 AAAAATGCTAATACATGTTTAATAAAAT-ATTTT-----TCGTTGGAAGTCAGTTTATTC 48611 || || || | || ||||| || || | | || |||||| || | | || | | Sbjct 2138604 AAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTG--AGACTG-TTCTCC 2138660 Query 48612 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 || || | | |||| ||| | ||||||||||||||| ||||| || ||||| || ||| Sbjct 2138661 CAATCGCGGTTGTCTTGTGAGAGATCTACTTCTTCAGCGGTCCAGAAGGATGCTTCGGCT 2138720 Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGG 48730 || || ||||| | ||| || | ||| ||||||||||| ||| ||||| | ||| Sbjct 2138721 TTCTTGTACATCTCCCAGATCTGTGGGTAGTGGATTGGGAACATACAGAATCTGTCTGG 2138779 >seq4 Length=14994381 Score = 105 bits (116), Expect = 9e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| || || | ||| | || || | ||| | || | || |||||||| ||||||| Sbjct 294908 CCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCG 294849 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||||||||||||||| ||| ||| ||||||||| |||| ||||||||| || || Sbjct 294848 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGAA 294789 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || || || || || || ||| | ||| || ||| | ||| || || || Sbjct 294788 ACACCAATACCGCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 294729 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 || || || || ||||| ||||| | ||||| ||||| Sbjct 294728 CCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 294688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662087762720