Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 120 4e-22 >seq4 Length=14994381 Score = 120 bits (132), Expect = 4e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| || || | ||| | ||||| | ||| | || | || |||||||| ||| ||| Sbjct 294908 CCTCCTTGGTCGACATAACGAGCAGTATCATTGAATACACGCAGCATTGGAACAATACCG 294849 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||| ||| ||| ||||||||| ||||||||||||| || || Sbjct 294848 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCAGTTGCACGAATATTATGAACTGAA 294789 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || || || || ||| || | |||||| ||| | ||| ||||| ||| Sbjct 294788 ACACCAATACCGCCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 294729 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || || || |||||||| ||||| | ||||| ||||| Sbjct 294728 CCTTCAATGCTATCATCTTTCATGCACACCAGAAAGCAGCT 294688 Score = 87.8 bits (96), Expect = 3e-12 Identities = 91/117 (78%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 76085 AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 76144 |||||||||||||| || || || || || |||||||||||||||||||| | | | || Sbjct 296233 AGAATAAATGCATCAGCAAGACCTTGTACACCAATACCAATAGGTCTATGACGCATGTTT 296174 Query 76145 GAAATTTCAGC-TTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT 76200 ||| ||| || ||| | ||| || ||||| | |||||| || ||||||||||| Sbjct 296173 GAAGTTTTTGCAGTCT-CCACAGGATAGTAATTCACATCTATTATCTTATTGAGATT 296118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712927511271360