Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq6 342 6e-89 seq2 149 8e-31 >seq6 Length=16577294 Score = 342 bits (378), Expect = 6e-89 Identities = 502/708 (71%), Gaps = 2/708 (0%) Strand=Plus/Minus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||| | | |||||||| || ||||| || |||||||| || | || | Sbjct 1968796 TGGATGACTGGTTACGGAGGGACCGCTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCT 1968737 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 | || ||| ||| | || | || || ||| | || || ||||| ||||| || | Sbjct 1968736 TCCCTTGTGCCTATTTCGCTTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACTTCAT 1968677 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 ||||||| || || ||||| ||| || | || ||| |||||| | || || |||| Sbjct 1968676 GGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTTAACCGCTGCAG 1968617 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || ||||||||| | | | | |||||| | | |||| ||||||||||| | | Sbjct 1968616 TTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTGTTACTGTGGGGTCCTGAAGCAC 1968557 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||||||| | | || |||| ||| | || || || ||| |||||| || ||||||| Sbjct 1968556 AAGGAGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGGCTTTTGTTGCTCTCCACG 1968497 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGT 186329 | || || || | |||||||| ||| | || ||||||||| | ||| ||| | | Sbjct 1968496 GCGCTTTCGCATTAATAGGTTTTATGTTACGTCAGTTTGAACTTGCTCGATCTGTTCAAT 1968437 Query 186330 ATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTC 186389 | || || || ||||| || || || |||||||| || ||||| |||||| ||| ||| Sbjct 1968436 -TGCGACCTTATAATGCAATCGCATTCTCTGGTCCCATTGCTGTTTTTGTTTCTGTCTTC 1968378 Query 186390 CTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCA 186449 || || || || || || || || |||||||| || || ||||| || || || Sbjct 1968377 CTAATTTATCCACTAGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCT 1968318 Query 186450 ATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 186509 || ||| ||||| | | || ||||||| || || || ||||| ||||| ||||| || Sbjct 1968317 ATATTTCGATTCATTCTCTTTTTCCAAGGGTTTCATAATTGGACATTGAACCCATTTCAT 1968258 Query 186510 ATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACT 186569 |||||||| || || ||| | || || | |||||||| | || || ||||||| |||| Sbjct 1968257 ATGATGGGAGTCGCTGGTGTACTGGGCGCGGCTCTGCTATGCGCTATTCATGGTGCTACT 1968198 Query 186570 GTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACG 186629 |||||||||||| | | ||||||||| || ||||| |||||| || || | | Sbjct 1968197 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCA 1968138 Query 186630 ACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGG 186677 || |||| |||||||| ||||| |||||||| || ||| | || ||| Sbjct 1968137 ACTCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGG 1968090 >seq2 Length=14066726 Score = 149 bits (164), Expect = 8e-31 Identities = 138/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 171004 TTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTT 171063 ||||||| |||||||| ||||| ||| | |||||| || || || ||||||||| ||| Sbjct 1809288 TTCTTGACGCTGCTGAGGAAGCTGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCTT 1809229 Query 171064 GTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCC 171123 |||||| ||||||||| ||| ||| | ||| |||||||| || || || || ||||| Sbjct 1809228 GTTCGAGCTGTGCTGGTAAAGTTGTGTCTGGATCTGTTGACCAGTCTGACCAGAGTTTCC 1809169 Query 171124 TTGATGATGATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCCTAC 171178 |||||||||| |||||||| |||| || |||| ||||| | | | |||||||| Sbjct 1809168 TTGATGATGAGCAGATTGATGCAGGGTTTGTTCTCACCTGTGCCGCTTATCCTAC 1809114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622064389244760