Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_032105.1 Length=33562 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 1e-13 >seq1 Length=19566579 Score = 89.7 bits (98), Expect = 1e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 17228 CAGCAAAAGGTGGTAGACGGCATCGCTTCGGGCATCAACGGGGTGGTGGACCTGGCCAAC 17287 || |||||||||||||| ||| | || || ||||| | |||||||||||||||||||||| Sbjct 3968811 CAACAAAAGGTGGTAGATGGCCTGGCCTCTGGCATTAGCGGGGTGGTGGACCTGGCCAAC 3968870 Query 17288 CAGGCCGTGCAGAA 17301 ||||| ||||| || Sbjct 3968871 CAGGCAGTGCAAAA 3968884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107275815266024