Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsella_20rubella_20[refseq_20GCF_5F000375325.1_202013-04-23] 773 sequences; 133,063,876 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq5 138 1e-27 >seq5 Length=13709650 Score = 138 bits (152), Expect = 1e-27 Identities = 349/525 (66%), Gaps = 8/525 (2%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || || || || || |||| |||||| || | | |||||||| || || || ||||| Sbjct 2138187 CACGCGAAGTCGCAGTGTAAGCCTTCGTCTCGAGAGATCAATTCGTTTGAGAAAGTTAAC 2138246 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAGAA 23627 || ||||| | ||||||||| |||| ||| || || | |||| | | | ||||| ||||| Sbjct 2138247 CCAGGCATGAGTCCTCGTTTCTTAAGCCAGAAGATGG-AGCAGAAGCTTCCGGAGAAGAA 2138305 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 ||||| |||||| || || || || | ||| | |||| || | | | | Sbjct 2138306 GATACCTTCAACACAAGCGAAAGCAACGATTCGTTCAGCAAAGGTC---TGAGATCCGTC 2138362 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTT 23747 |||||||| | | ||| | ||| ||| || || ||| || ||||| || Sbjct 2138363 GATCCATTTCATCGCCCACTGAGCTTTCTTCGCGACGCAAGGAATCGTCTCAATCGCGCG 2138422 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 |||||| | | |||| |||||| | || || ||||| | || | ||||||||| Sbjct 2138423 GAAGAGATGGTCTCTCTCTTTGTTATCTTTGATGTAAGTATCGAGAAGAAGACTATACAT 2138482 Query 23808 TTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAA 23867 |||||||||||||| ||||| || ||||| || || || ||| | || || || | Sbjct 2138483 CTCAGAATGAATATTCTCAATCGCGATCTGGAAACCGTAGAAAGCACGCGCCTCCGAGAC 2138542 Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927 ||| ||||| | || | ||| | ||| || ||| || || || ||||| Sbjct 2138543 TTGGACATCGGACATGAACCGAGAAGCGAGATTCTCTAAAACGATTCCGTCGGATGCAGC 2138602 Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC--AGTTGATAAT-TTTTTCCA 23984 |||||||| || || | ||| || || || | ||| | ||||| | | || | ||| Sbjct 2138603 GAAGAAAGCGAGGACGTGTTTGATGAAGTGACGTTCGCCGTCGTTGAGACTGTTCTCCCA 2138662 Query 23985 ATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 ||| | |||| ||| | ||| ||||| ||| | ||||| || Sbjct 2138663 ATCGCGGTTGTCTTGTGAGAGATCTACTTCTTCAGCGGTCCAGAA 2138707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521482961122200