Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 >seq2 Length=163962470 Score = 104 bits (114), Expect = 2e-17 Identities = 365/561 (65%), Gaps = 17/561 (3%) Strand=Plus/Minus Query 16202 CACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAAC 16261 || || || || || || | |||||||| || || | || || || || ||||| Sbjct 163233282 CAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTTAAT 163233223 Query 16262 CCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCG--CAGCAAATGACCCCGAAAAGA 16319 || |||||| |||| || || ||||| ||||||| ||| || | || || |||| Sbjct 163233222 CCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTT--CCAGAGAAGA 163233165 Query 16320 ATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC--ATCTTTATT 16377 | || || |||||| | |||||||| | || || || || | || | | | || Sbjct 163233164 AAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGTCTCCGAACCTTC-- 163233107 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGC 16437 |||||| | |||||| || || | | | ||| || || || || || Sbjct 163233106 ---AATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTGC 163233050 Query 16438 CTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTA 16497 ||||| | | ||||| | | ||| | || |||| || | ||| |||||||| Sbjct 163233049 GCGGAACAACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTA 163232990 Query 16498 CATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTCCG 16556 ||| || || || || ||||| || || || |||||||||||| ||||| || ||||| | Sbjct 163232989 CATCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCA-CGCGCCTCAG 163232931 Query 16557 CTATTTGTACTTC-CACGTAAAATCGTTCC-GCCAGGTTCTCATTCACGATACCGTCACT 16614 | | ||| || || | | || | | || || || ||||| |||||||| || Sbjct 163232930 CAACTTGCACATCTTTCATGAA--CCTCCCAGCGAGATTCTCCAAAACGATACCATCCGA 163232873 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674 ||| ||||| ||||| | | ||| | || || | |||| | || || ||| | | Sbjct 163232872 TGCTGCAAAGAACGCAAGCACGTGAGTGATAAAGTGCCTTTCACCGGACGTCAGATTTTC 163232813 Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734 ||| | ||| |||| ||| |||||||| | |||||||| |||| || Sbjct 163232812 CCAGTGACGGGTATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGCCATGGC 163232753 Query 16735 CTTTTTATACATTTTCCAAAT 16755 || |||||||||| |||||| Sbjct 163232752 TTTCTTATACATTTCCCAAAT 163232732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511403999109640