Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 154 2e-32 seq668 89.7 6e-13 >seq2 Length=163962470 Score = 154 bits (170), Expect = 2e-32 Identities = 396/601 (66%), Gaps = 8/601 (1%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 ||| || || ||||| ||||| | ||| ||||| || ||| || || || || || || Sbjct 163233286 CAAGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGT 163233227 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 24250 | ||| ||||||| || | |||||| | ||||||||| || || |||||| || Sbjct 163233226 TAATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCAGAGAA 163233167 Query 24251 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA----CCGGCGCTGT 24306 |||||| ||||| || ||||| || | | | || || || ||| || | Sbjct 163233166 GAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGTCTCCGAACCT-T 163233108 Query 24307 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 24366 || ||||| ||||||| | |||||||| | || ||||| || ||||| || | Sbjct 163233107 CA---ATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTG 163233051 Query 24367 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 24426 | || | ||| ||||||| | ||| || | || | || | || | ||| | Sbjct 163233050 CGCGGAACAACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAGCAAACTGT 163232991 Query 24427 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 24486 |||| || ||||| || || ||||| || ||||||||||| |||||| | ||||| | Sbjct 163232990 ACATCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCACGCGCCTCAG 163232931 Query 24487 TAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 24546 || || || ||| | || | | || | ||| || || || || || | Sbjct 163232930 CAACTTGCACATCTTTCATGAACCTCCCAGCGAGATTCTCCAAAACGATACCATCCGATG 163232871 Query 24547 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCC 24606 ||||||| ||||| | || || | ||||| | |||| | | || || || | || Sbjct 163232870 CTGCAAAGAACGCAAGCACGTGAGTGATAAAGTGCCTTTCACCGGACGTCAGATTTTCCC 163232811 Query 24607 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 | | | | |||| |||| ||| |||||||| | |||||||| |||||| || | Sbjct 163232810 AGTGACGGGTATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGCCATGGCTT 163232751 Query 24667 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGAT 24726 | |||||||| | ||| || | |||| |||||||| || ||| |||| || ||| | Sbjct 163232750 TCTTATACATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTGGGT 163232691 Query 24727 T 24727 | Sbjct 163232690 T 163232690 >seq668 Length=133065 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||| || || | |||| ||| |||| |||| | || | | ||| |||||||| ||| Sbjct 39893 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAATACACGTAGCATGGGAATAATTCCA 39952 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || |||| ||||| ||||| ||||| || ||| | |||||||||| | ||| Sbjct 39953 TTTGATGTCCCATTTGTCCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGAT 40012 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | || || || || || |||| || | || || || | |||||||| ||| Sbjct 40013 ACTCCAATTCCTCCAGCAGATTTACTAATAACAGCACACTCCTTAAGAGTATCATATATG 40072 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 ||||| ||||||||||| ||||| | || || |||||| Sbjct 40073 CCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 40114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593709525186960