Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 9e-16 seq10 91.5 1e-13 seq3 87.8 2e-12 >seq8 Length=153299543 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||| | ||| | ||||| ||||| ||||| ||||||||| || |||| | | Sbjct 133642107 ATGCAAGTCTTCGTGAAAACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAAAGCTCC 133642048 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| || ||| || ||||| || | || |||||| Sbjct 133642047 GACACAATCGACAACGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCACCAGATCAG 133641988 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | || ||||| || || || |||||||| || |||||||||||||| Sbjct 133641987 CAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGACGGACACTGGCCGATTACAAT 133641928 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||||||||| || ||||| | ||||| Sbjct 133641927 ATTCAGAAGGAATCGACCCTTCATCTTGTGTT 133641896 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| |||| || || ||||| ||| ||| |||| | || Sbjct 133643019 ATGCAGATCTTTGTGAAAACCCTGACCGGAAAGACCATCACCCTCGAGGTGGAAAGCTCA 133642960 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | ||||| || || || || ||||| | || |||||| Sbjct 133642959 GACACCATTGATAACGTTAAGGCTAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAG 133642900 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || || || || || || | ||| | ||||||||||| Sbjct 133642899 CAAAGATTGATCTTTGCCGGAAAGCAGCTTGATGACGGCCGTACTTTAGCCGATTACAAC 133642840 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 |||||||||||||| || |||||| ||||| | || | || || ||| Sbjct 133642839 ATTCAGAAGGAATCCACCCTTCACTTGGTGCTCCGTCTGCGTGGTGGG 133642792 >seq10 Length=205736368 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||||| || ||||| || ||||| || |||||||||||| Sbjct 3762122 GATAAAGAAGGCATACCGCCTGATCAGCAGAGACTGATATTTGCTGGGAAACAACTGGAA 3762181 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| ||| |||| |||||||| |||||||| ||||| |||||||| Sbjct 3762182 GATGGTCGAACCTTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCA 3762231 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | || || ||||| ||||| ||||||||| || |||| | | Sbjct 339121 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAAAGCTCT 339062 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| || ||| || ||||| ||| | || || || Sbjct 339061 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCGGACCAG 339002 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | || ||||| || || || |||||||| | || |||||||||||||| Sbjct 339001 CAAAGGTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAAT 338942 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||| |||||||| || ||||| | ||||| Sbjct 338941 ATTCAAAAGGAATCGACCCTTCATCTTGTGTT 338910 >seq3 Length=261510930 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || |||||||| | || | ||||| || ||||| || |||| |||||| Sbjct 37117071 AAAATTCAAGACAAAGAAGGGATACCTCTCGATCAGCAGAGACTAATTTTTGGTGGCAAA 37117012 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| |||||||| |||| | || |||||||||||||| || ||||| | |||||| Sbjct 37117011 CAATTGGAAGATGGTCGAACTCTAGCTGATTACAATATTCAAAAAGAATCAATGCTTCAC 37116952 Query 29166 ATGGTGTT 29173 |||| || Sbjct 37116951 TTGGTTTT 37116944 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAA-CGGAACCCGC 29020 ||||| || ||| |||| || | || || || ||||||||| ||| || || || Sbjct 37145585 ATGCAGATCTTCGTCAAGACTCTAACCGGGAAGACCATTACCCTTGAAGTCGAAAGTAGC 37145526 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCC-CGTAGATC 29079 || || | | | || | ||| |||||| || ||||| || | || ||| || | Sbjct 37145525 -GACACAATCGACAATGTCAAGGCCAAAATTCAGGACAAAGACGGAATACCGCGT-GACC 37145468 Query 29080 AACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACA 29139 | ||||||| || |||| |||||||| |||||||| | |||| | || ||||||| Sbjct 37145467 AGTAAAGACTAATTTTTGGTGGCAAACAGTTGGAAGATGGCCGAACTCTAGCTGATTACA 37145408 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||||| || ||||| || |||||| |||| || Sbjct 37145407 ATATTCAAAAAGAATCAACACTTCACTTGGTTTT 37145374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428327506498685