Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq3 102 7e-17 seq10 98.7 8e-16 seq8 95.1 1e-14 >seq3 Length=261510930 Score = 102 bits (112), Expect = 7e-17 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAA-CGGAACCCGC 25093 ||||| || ||| |||| || | || || || ||||||||| ||| || || || Sbjct 37145585 ATGCAGATCTTCGTCAAGACTCTAACCGGGAAGACCATTACCCTTGAAGTCGAAAGTAGC 37145526 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCC-CGTAGATC 25152 || || | | | || ||||| |||||| || ||||| || | || ||| || | Sbjct 37145525 -GACACAATCGACAATGTCAAGGCCAAAATTCAGGACAAAGACGGAATACCGCGT-GACC 37145468 Query 25153 AACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACA 25212 | ||||||| || |||| |||||||| ||||||||| | |||| | || ||||||| Sbjct 37145467 AGTAAAGACTAATTTTTGGTGGCAAACAGTTGGAAGATGGCCGAACTCTAGCTGATTACA 37145408 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||| ||||| || |||||| |||| || Sbjct 37145407 ATATTCAAAAAGAATCAACACTTCACTTGGTTTT 37145374 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||| | || ||| |||||||| | || | |||||||| ||| | || || | | Sbjct 37117156 ATGTAGATCTTCGTCAAAACACTAACCAGGAAAACCATCACCCTTGGAAGTCAAAA-GTA 37117098 Query 25095 GAGAC--GGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 25152 | ||| | | | | || ||||| |||||| || |||||||| | || | |||| Sbjct 37117097 GCGACATGATCGACAATGTCAAGGCCAAAATTCAAGACAAAGAAGGGATACCTCTCGATC 37117038 Query 25153 AACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACA 25212 | || ||||| || |||| |||||||||||||||||| |||| | || ||||||| Sbjct 37117037 AGCAGAGACTAATTTTTGGTGGCAAACAATTGGAAGATGGTCGAACTCTAGCTGATTACA 37116978 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||| ||||| | |||||| |||| || Sbjct 37116977 ATATTCAAAAAGAATCAATGCTTCACTTGGTTTT 37116944 >seq10 Length=205736368 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || || ||||| ||||| ||||||||| || |||| | | Sbjct 339121 ATGCAAATCTTCGTGAAGACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAAAGCTCT 339062 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | ||| || ||| || ||||| ||| | || || || Sbjct 339061 GACACCATCGACAACGTGAAGGCCAAGATTCAGGACAAAGAGGGTATCCCACCGGACCAG 339002 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || ||||| || || || ||||||||| | || |||||||||||||| Sbjct 339001 CAAAGGTTGATTTTTGCCGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAAT 338942 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 |||||||||||||| || ||||| | ||||| Sbjct 338941 ATTCAAAAGGAATCGACCCTTCATCTTGTGTT 338910 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || ||||| || ||||| || ||||| || |||||| ||||| Sbjct 3762122 GATAAAGAAGGCATACCGCCTGATCAGCAGAGACTGATATTTGCTGGGAAACAACTGGAA 3762181 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| ||| |||| |||||||| ||||| || ||||| |||||||| Sbjct 3762182 GATGGTCGAACCTTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCA 3762231 >seq8 Length=153299543 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||| | ||| | ||||| ||||| ||||| ||||||||| || |||| | | Sbjct 133642107 ATGCAAGTCTTCGTGAAAACTTTGACTGGCAAGACCATTACCCTTGAGGTGGAAAGCTCC 133642048 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | ||| || ||| || ||||| || | || |||||| Sbjct 133642047 GACACAATCGACAACGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCACCAGATCAG 133641988 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||||| | || ||||| || || || ||||||||| || |||||||||||||| Sbjct 133641987 CAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGACGGACACTGGCCGATTACAAT 133641928 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||||| |||||||| || ||||| | ||||| Sbjct 133641927 ATTCAGAAGGAATCGACCCTTCATCTTGTGTT 133641896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410788654284578