Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq12 109 6e-19 seq8 105 8e-18 seq9 104 3e-17 seq10 102 9e-17 seq5 100 3e-16 seq3 100 3e-16 seq1308 95.1 1e-14 >seq12 Length=229934170 Score = 109 bits (120), Expect = 6e-19 Identities = 146/198 (74%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || ||||| | || || ||||||||||| ||||| Sbjct 3485406 CTCCTTCTGGATGTTGTAGTCAGCTAGTGTCCGGCCATCCTCGAGCTGCTTACCTGCGAA 3485465 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || | | ||||||||| | ||| | || ||||||| | ||| | || || |||| || Sbjct 3485466 AATCAACCTCTGCTGGTCCGGCGGGATGCCTTCCTTGT-CTTGAATCTTGGTCTTGA-CG 3485523 Query 43111 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | | | |||||| || || || || | || || || || ||||| || ||||| Sbjct 3485524 TTGTCGATGGTGTCGGATGACTCTACCTCTAAGGTAATAGTCTTACCCGTCAGGGTCTTC 3485583 Query 43170 ACAAAGATTTGCATTTTT 43187 |||||||| ||||||||| Sbjct 3485584 ACAAAGATCTGCATTTTT 3485601 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| || || || | || || ||||||||||| ||||| Sbjct 3077661 CTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGACCATCCTCGAGCTGCTTACCTGCGAA 3077720 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | ||||||||| | || | || ||||||||| ||| | || || | | | | Sbjct 3077721 AATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCC-TGAATCTTGGTCTTAACAT 3077779 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || || || || | || || || |||||||| || ||||| | Sbjct 3077780 TGTCGATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCA 3077839 Query 43171 CAAAGATTTGCATTTTT 43187 ||||||| ||||||||| Sbjct 3077840 CAAAGATCTGCATTTTT 3077856 Score = 93.3 bits (102), Expect = 5e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | ||| | || | ||||| || ||| || ||||| ||||| || ||| Sbjct 186924801 CCACCTCTCAGACGAAGAACAAGATGCAGGGTTGACTCTTTCTGAATGTTGTAGTCTGCC 186924860 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || || ||||| |||||||| || |||||||||||||| | || Sbjct 186924861 AGGGTCCTTCCATCCTCAAGTTGCTTGCCAGCGAAGATCAGTCGCTGCTGGTCTGGAGGA 186924920 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA--TTCCA 43134 | | ||||| ||| ||| |||||| | ||| | || ||| || | ||| | Sbjct 186924921 ATCCCTTCCTTATCC-TGAATTTTTGCCTTCACGTTGTCA-ATTGTATCTGAACTTTCAA 186924978 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || ||||| ||||| || || || || |||||||| ||||| Sbjct 186924979 CTTCAAGGGTAATGGTCTTGCCTGTAAGTGTTTTGACAAAGATCTGCAT 186925027 >seq8 Length=153299543 Score = 105 bits (116), Expect = 8e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| ||||| || | ||| ||||| || || |||||||||||||| || || | Sbjct 133642576 ACGCAATACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAGGGTACGGCC 133642635 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || | ||||||||||| || || || | |||||||| | ||| | | |||||| Sbjct 133642636 ATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGCGGGATACCCTCCTT 133642695 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| |||| | | | ||| | | | |||||| |||||| || | |||| Sbjct 133642696 GTCC-TGAATTTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGA 133642754 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || || ||||| |||||||| ||||| Sbjct 133642755 CTGTCTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 133642791 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| |||| | |||||| | ||| | || ||||| |||||||||||||| ||| Sbjct 133641881 CCTCCCCTTAGCCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGCC 133641940 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || ||||| | || || | |||||||||||| || || | | ||||| || | || Sbjct 133641941 AGTGTCCGTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTTTGCTGATCTGGTGGG 133642000 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || ||| |||||| ||| | || | | | ||| | | | |||||| |||||| Sbjct 133642001 ATGCCCTCTTTGTCC-TGAATCTTGGCCTTAACGTTGTCGATTGTGTCGGAGCTTTCCAC 133642059 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || ||||| ||||| || | || || || |||| |||||| Sbjct 133642060 CTCAAGGGTAATGGTCTTGCCAGTCAAAGTTTTCACGAAGACTTGCAT 133642107 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| || | ||| |||||| || || ||||||||||| || || || |||| || Sbjct 133642127 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCGTCCTCA 133642186 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| || | || |||||||| | || | | ||||||||| | Sbjct 133642187 AGCTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCCTGG 133642246 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 || || |||| | | | |||||| ||| || |||| ||||| || || Sbjct 133642247 ATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCGAGGGTGATTGTCTTT 133642306 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| ||||| || || |||||||| Sbjct 133642307 CCAGTTAAAGTCTTCACGAAAATTTGCAT 133642335 >seq9 Length=238794889 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || || |||| |||||| || | ||| |||||| || |||||||||||||| Sbjct 232793730 CCTCCCCTCAATCGCAGCACCAAGTGTAGCGTGGACTCCTTCTGGATATTGTAATCAGCA 232793671 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | | || || |||||||||||||| || || | ||||||||| || | || Sbjct 232793670 AGGGTCCTCCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGA 232793611 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||| || ||| || || | | | | || || ||| || Sbjct 232793610 ATCCCCTCCTTATCTTGGATCTTCGCCTTCACGTTATCAATTGTATCAGAACTTTCGACC 232793551 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || | ||||| |||||||| ||||| Sbjct 232793550 TCCAAGGTGATGGTCTTGCCTGTCAATGTCTTGACAAAGATCTGCAT 232793504 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || || |||| ||||||||| | ||| |||||| || |||||||||||||| Sbjct 232658397 CCTCCCCTCAATCGCAGCACCAAATGTAGCGTGGACTCCTTCTGGATATTGTAATCAGCA 232658338 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || ||| | | || || || ||||||||||| || || | ||||||||| || Sbjct 232658337 AGGCTCCTCCCATCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGATC 232658285 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| ||||| || | || || |||||||| ||||| || Sbjct 232658134 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCGACCATCCTCAAGCTGCTTTCCAGCAAA 232658075 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || | | ||||||||| | || | | ||||||||| ||| | || | |||| Sbjct 232658074 GATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCC-TGAATCTTAGCCTTGACAT 232658016 Query 43111 TCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| ||| || || || | || ||||| ||||| || || |||| Sbjct 232658015 TATCGATAGTGTCTGAACTC---TCAACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTCT 232657959 Query 43168 TTACAAAGATTTGCAT 43183 |||||||||||||||| Sbjct 232657958 TTACAAAGATTTGCAT 232657943 >seq10 Length=205736368 Score = 102 bits (112), Expect = 9e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| ||||| | ||||||||| | |||| ||| || || || ||||||||||| Sbjct 187644234 TCCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAGC 187644293 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 ||||||| | | || || |||||||| ||||| || || | ||||||||||| Sbjct 187644294 AAGAGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTC 187644347 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || |||||| || ||||||||||| || || || || | Sbjct 339590 ACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCTAGGGTACGGCC 339649 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 |||||| |||||||| || || || || | || |||||||| | || | || ||||| Sbjct 339650 GTCATCAAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGGGGATGCCTTCCTT 339709 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| || || | ||| | | | |||||| |||||| |||| |||| Sbjct 339710 GTCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCGGAGCTTTCCACCTCGAGGGTGA 339768 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || || || || || |||||||| ||||| Sbjct 339769 TGGTCTTTCCGGTAAGGGTTTTCACAAAGATCTGCAT 339805 Score = 100 bits (110), Expect = 3e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || || |||| |||||| || | ||| |||||| || |||||||||||||| Sbjct 149571141 CCTCCCCTCAATCGCAGCACCAAGTGTAGCGTGGACTCCTTCTGGATATTGTAATCAGCA 149571200 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | | || || |||||||||||||| || || | ||||||||| || | || Sbjct 149571201 AGGGTCCTCCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGA 149571260 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | |||||| || ||| || || | | | | || || ||| || Sbjct 149571261 ATCCCCTCCTTATCTTGGATCTTCGCCTTCACGTTATCAATTGTATCAGAACTC---TCG 149571317 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||||||||| || || | ||||| |||||||| ||||| Sbjct 149571318 ACTTCCAAGGTGATGGTTTTCCCAGTCAATGTCTTGACAAAGATCTGCAT 149571367 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || || |||| ||||||||| | ||| |||||| || |||||||||||||| Sbjct 149589395 CCTCCCCTCAATCGCAGCACCAAATGTAGCGTGGACTCCTTCTGGATATTGTAATCAGCA 149589454 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || |||| | | || || || ||||||||||| || || | ||||||||| || Sbjct 149589455 AGGGTCCTCCCATCCTCGAGTTGCTTACCAGCAAAGATCAATCGCTGCTGATC 149589507 Score = 89.7 bits (98), Expect = 6e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||||||||| || || || |||| || |||||||| ||||| || Sbjct 339158 CTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAA 339217 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | || ||||| || | || | | ||||||||| ||| || |||| ||| Sbjct 339218 GATCAATCTTTGCTGATCTGGGGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGT 339276 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| |||||| |||| ||||| || || || || || ||||| | Sbjct 339277 TGTCAATAGTGTCTGAACTTTCCACCTCGAGGGTGATCGTCTTCCCGGTGAGGGTCTTCA 339336 Query 43171 CAAAGATTTGCAT 43183 ||||||| ||||| Sbjct 339337 CAAAGATCTGCAT 339349 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | | |||||| | ||| | || |||||||||||||||||||| ||| Sbjct 338895 CCTCCCCTGAGCCTCAACACAAGATGAAGGGTCGATTCCTTTTGAATATTGTAATCGGCC 338954 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || | ||||||||| || || || | | |||||||| | || Sbjct 338955 AGTGTCCTTCCATCTTCCAACTGCTTACCGGCAAAAATCAACCTTTGCTGGTCCGGTGGG 339014 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 43132 | | ||| |||||| ||| | || | | ||| | | | ||||| ||| ||| Sbjct 339015 ATACCCTCTTTGTCC-TGAATCTTGGCCTTCACGTTGTCGATGGTGTCAGAGCT---TTC 339070 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | || ||||| ||||| || | ||||| || ||||||||||| Sbjct 339071 CACCTCAAGGGTAATGGTCTTGCCAGTCAAAGTCTTCACGAAGATTTGCAT 339121 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| ||||| ||||| || | || || |||||||| ||||| || Sbjct 149589658 CTCCTTCTGGATGTTGTAGTCAGCAAGAGTTCGACCATCCTCAAGCTGCTTTCCAGCAAA 149589717 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 || | | ||||||||| | || | | ||||||||| ||| | || | |||| Sbjct 149589718 GATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCC-TGAATCTTAGCCTTGACAT 149589776 Query 43111 TCGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| ||| || || || | || ||||| ||||| || || |||| Sbjct 149589777 TATCGATAGTGTCCGAACTC---TCAACTTCAAGGGTAATGGTCTTGCCAGTGAGGGTCT 149589833 Query 43168 TTACAAAGATTTGCAT 43183 |||||||||||||||| Sbjct 149589834 TTACAAAGATTTGCAT 149589849 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || |||||| || || ||||||||||| || || || | Sbjct 339362 ACGGAGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGGCC 339421 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || | | |||||||| | || | || ||||| Sbjct 339422 GTCCTCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGGTCTGGGGGGATGCCTTCCTT 339481 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 |||| ||| || |||| ||| | | | ||||| ||| ||| || |||| || Sbjct 339482 GTCCTGGATCTTGGCCTTGA-CGTTGTCAATAGTGTCAGAGCT---TTCAACCTCGAGCG 339537 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || || || || | ||||| || ||||| ||||| Sbjct 339538 TGATTGTCTTTCCGGTCAAAGTCTTCACGAAGATCTGCAT 339577 >seq5 Length=217274494 Score = 100 bits (110), Expect = 3e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 42996 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 43055 ||||| ||||| || || ||||| || || | || || |||||||||||||| ||||| Sbjct 129771664 TTTTGGATATTATAGTCTGCCAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAATATC 129771723 Query 43056 AGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGC 43114 | ||||||||||| | || | || ||||| ||| ||| | || | |||| | | Sbjct 129771724 AAACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCC-TGAATCTTAGCCTTGACATTGTC 129771782 Query 43115 CACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAA 43174 | || ||||| ||||| || || | || ||||| || || ||||| || || || || Sbjct 129771783 AATGGTATCGCTGGATTCAACCTCAATGGTTATGGTCTTCCCTGTTAGGGTTTTCACGAA 129771842 Query 43175 GATTTGCAT 43183 ||||||||| Sbjct 129771843 GATTTGCAT 129771851 >seq3 Length=261510930 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | | ||| ||||| || | ||| || |||||||||||||||||||| Sbjct 37145358 TCCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGAATATTGTAATCAGC 37145417 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || | || || | ||| || ||| | || || |||| | |||||| ||| Sbjct 37145418 TAGAGTTCGGCCATCTTCCAACTGTTTGCCACCAAAAATTAGTCTTTACTGGTCACGCGG 37145477 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | || |||||| ||| |||| | |||| | | | |||||||| ||| | Sbjct 37145478 TATTCCGTCTTTGTCC-TGAATTTTGGCCTTGACATTGTCGATTGTGTCGCTACTTTCGA 37145536 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || ||||| || || ||||| ||||| || ||||| ||||| Sbjct 37145537 CTTCAAGGGTAATGGTCTTCCCGGTTAGAGTCTTGACGAAGATCTGCAT 37145585 Score = 86.0 bits (94), Expect = 7e-12 Identities = 91/117 (78%), Gaps = 6/117 (5%) Strand=Plus/Plus Query 60015 TTATCTTTTATGTAATCAGATAACAACAAATTAACGTTTATGAAAAATTTTCTCCTCGGC 60074 ||| |||| ||| ||| | |||| |||||| ||| |||||||| | || || Sbjct 3725275 TTAGCTTTGATG-AATAAAATAA-AACAAAAAAAC----ATGAAAAAAGGACGCCGTTGC 3725328 Query 60075 AGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTAC 60131 ||| ||||||||| |||| |||||||||||||||| ||||||||||||||||||| Sbjct 3725329 CGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTCACCACTATACTAC 3725385 >seq1308 Length=1742971 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| |||||| || |||||||| ||||||| |||| | || || |||||| Sbjct 185413 TGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGCCAAGGTCCTTCCATCCTCCAGCTGC 185354 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 |||||||| || || | | ||||||||| | || | | |||||||||| ||| | || Sbjct 185353 TTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGAATTCCCTCCTTGTCC-TGAATCTT 185295 Query 43101 TG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGT 43159 | || | | | | |||||| |||||| |||| |||||||| || ||||| Sbjct 185294 AGCCTTCACATTGTCAATTGTGTCGGAGCTTTCCACCTCGAGAGTGATGGTCTTTCCCGT 185235 Query 43160 TAGCGTCTTTACAAAGATTTGCAT 43183 || ||||| || || || ||||| Sbjct 185234 GAGGGTCTTGACGAAAATCTGCAT 185211 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Minus Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046 || |||||||| || || ||||| || || || || || | || ||||||||||| || Sbjct 184723 GTACTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTACGGCCATCTTCTAGCTGCTTTCCG 184664 Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106 || ||||| || | ||||||||| | || | || |||||| ||| ||| || ||| Sbjct 184663 GCAAATATAAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTG 184604 Query 43107 AGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162 | ||| | | | || || ||| |||||| || | || ||||| || || || || Sbjct 184603 A-CGTTGTCTATGGTATCTGAGCT---TTCCACCTCCAAAGTAATGGTCTTCCCTGTGAG 184548 Query 43163 CGTCTTTACAAAGATTTGCAT 43183 ||||| ||||| || ||||| Sbjct 184547 GGTCTTAACAAAAATCTGCAT 184527 Score = 84.2 bits (92), Expect = 3e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | || |||||| || || ||||||||||| ||||| || | Sbjct 184514 ACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCAGCTAGAGTACGACC 184455 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || | |||||| || ||||| || | | ||||||||| | || | | |||||| Sbjct 184454 GTCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGGATTCCCTCCTT 184395 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 43143 | | ||| | || | |||| | | | ||||| |||| ||||| || | | Sbjct 184394 AT-CTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTC---TCCACTTCCAAAG 184339 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | ||||| ||||| || || ||||| || || |||||||| Sbjct 184338 TAATGGTCTTGCCTGTGAGGGTCTTAACGAAAATTTGCAT 184299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571805970659560