Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq12 104 3e-17 seq10 98.7 1e-15 seq7 95.1 2e-14 seq9 84.2 3e-11 >seq12 Length=229934170 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 146066 AATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCA 146125 || |||||||| | ||| || || || || ||||| |||| ||||||||||| ||| Sbjct 186924360 AACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAGTTCTGCCATCC 186924419 Query 146126 TCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCT 146185 || | |||||| |||||||||||||| | |||||||| || ||||| || ||||| ||| Sbjct 186924420 TCAAGTTGTTTACCAGCAAAAATCAAACGCTGCTGATCTGGGGGAATCCCCTCTTTGTCT 186924479 Query 146186 TG 146187 || Sbjct 186924480 TG 186924481 >seq10 Length=205736368 Score = 98.7 bits (108), Expect = 1e-15 Identities = 88/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 146081 GTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||||| || ||| || | ||| ||||| | ||| |||| ||||| || ||||||||||| Sbjct 158025910 GTAGACTCCTTTTGA-ACATTGTAATCAGCAAGTGTTCGACTATCCTCAAATTGTTTTCC 158025852 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||| || || |||| |||||||||| |||||||||||| ||||| Sbjct 158025851 AGCAAATATTAACTTTTGTTGATCCGGAGAAATTCCTTCTTTGTCTTG 158025804 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || || || | ||||||||||| ||| || || || ||||||||||| ||||| ||| Sbjct 187645420 ATGTTGTAGTCAGCAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAACCTT 187645479 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || ||||||||||| || ||||| Sbjct 187645480 TGCTGATCAGGGGGAATTCCTTCCTTGTCTTG 187645511 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||||| || || || || ||||| ||||| | ||| || || | ||| || Sbjct 149589413 ACCAAATGTAGCGTGGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTCCCATCCTCG 149589472 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| || |||||||| ||||||| |||||||| || ||||| || ||||||||||| Sbjct 149589473 AGTTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGAATCCCCTCTTTATCTTG 149589531 Score = 89.7 bits (98), Expect = 8e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || || | | |||| ||| | || ||||| || || || ||||||| Sbjct 187644463 CCACCCCTCAGGCGCAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCTGCT 187644522 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| || | ||| || | ||||| || ||||||||||| |||||||| ||||| || Sbjct 187644523 AGAGTCCTTCCATCCTCAAGCTGTTTCCCGGCAAAAATCAACCTTTGCTGGTCCGGTGGG 187644582 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 187644583 ATTCCTTCCTTATCTTG 187644599 Score = 89.7 bits (98), Expect = 8e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| || || | ||||||||| | ||| || || ||||| || || || |||||||| Sbjct 187645192 ATATTGTAGTCAGCAAGAGTTCTACCATCCTCCAACTGTTTCCCGGCGAAGATCAATCTC 187645251 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || ||||| |||||||||||||| |||||||| Sbjct 187645252 TGTTGATCTGGAGGAATTCCTTCCTTATCTTG 187645283 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| || | | |||| ||| | || ||||| || ||||| || || | | Sbjct 187644691 CCACCTCTCAGCCGCAGCACCAGATGGAGGGTTGATTCCTTCTGAATATTGTAGTCAGCA 187644750 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | ||| ||||||||||||||||| ||||||||||| |||||| Sbjct 187644751 AGGGTACGACCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCTTTGCTGATCTGGAGGA 187644810 Query 146171 ATTCCTTCTTTATCTTG 146187 || || || || || || Sbjct 187644811 ATGCCCTCCTTGTCCTG 187644827 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || || || | ||||||||| | ||| || || || |||||||| || |||||||| Sbjct 187644964 ATGTTGTAGTCAGCAAGAGTTCTTCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCTC 187645023 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 || || || |||||||||||||| |||||||| Sbjct 187645024 TGTTGGTCTGGAGGAATTCCTTCCTTATCTTG 187645055 >seq7 Length=222112641 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| ||||| || || || ||||| || | || |||||||| ||||| ||||| Sbjct 220953976 GTTCCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTCTGGATATTGTAATCA 220954035 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||||||| | ||| || || ||||| ||||||||||| | || ||||| || ||| Sbjct 220954036 GCCAGAGTTCGACCATCTTCCAACTGTTTGCCAGCAAAAATTAGCCTCTGCTGGTCAGGA 220954095 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 220954096 GGTATCCCTTCTTTGTCCTG 220954115 >seq9 Length=238794889 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||||| || || || || ||||| ||||| | ||| | || | ||| || Sbjct 232658379 ACCAAATGTAGCGTGGACTCCTTCTGGATATTGTAATCAGCAAGGCTCCTCCCATCCTCG 232658320 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| || |||||||| ||||||| |||||||| || ||||| || ||||||||||| Sbjct 232658319 AGTTGCTTACCAGCAAAGATCAATCGCTGCTGATCTGGTGGAATCCCCTCTTTATCTTG 232658261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743511278531840