Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1308 123 2e-23 seq777 105 4e-18 seq8 93.3 3e-14 seq12 91.5 1e-13 seq10 91.5 1e-13 seq5 84.2 1e-11 >seq1308 Length=1742971 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||||||||||| || | ||| || ||||| ||||||||||| | Sbjct 184297 CCACCACGTAGCCTCAGCACCAAATGGAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCG 184238 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||| || ||||| || | || ||||||||| ||| Sbjct 184237 AGGGTTCGGCCGTCTTCGAGTTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 184178 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | || | | || | |||| ||| || Sbjct 184177 ATTCCCTCCTTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTTTCCACC 184118 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||| || |||||||||||||||||||||||||||||| Sbjct 184117 TCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 184070 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||||| || ||||| ||||||||||| | || |||| | || Sbjct 184738 AGGACAAGGTGAAGGGTACTCTCCTTCTGGATGTTGTAGTCCGCGAGGGTACGGCCATCT 184679 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || |||| ||||||||| ||| | || |||||| || Sbjct 184678 TCTAGCTGCTTTCCGGCAAATATAAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCC 184619 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | |||| | ||| | ||| || |||| || ||||| Sbjct 184618 TGGATCTTGGCCTTGACGTTGTCTATGGTATCTGAGCTTTCCACCTCCAAAGTAATGGTC 184559 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || ||||| |||||||| Sbjct 184558 TTCCCTGTGAGGGTCTTAACAAAAATCTGCAT 184527 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||||| ||| | |||| || ||||| |||||||| || | Sbjct 184525 CCACCGCGAAGACGGAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAATCAGCT 184466 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| ||||||||||| || ||||| || | || ||||||||| ||| Sbjct 184465 AGAGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGG 184406 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | || | | || | |||| || || Sbjct 184405 ATTCCCTCCTTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCCACT 184346 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| || ||||| ||||| ||||| || || || || || |||||| Sbjct 184345 TCCAAAGTAATGGTCTTGCCTGTGAGGGTCTTAACGAAAATTTGCATC 184298 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| ||| ||||| ||||||||||| | || ||| | || Sbjct 185194 AGGACAAGGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGCCCATCC 185135 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| |||||||| | || |||||| || ||| | | ||||||||| Sbjct 185134 TCGAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGGGGAATACCCTCCTTGTCC 185075 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | || | |||| || || |||| || ||||| Sbjct 185074 TGGATC-TTGGCTTTGACATTGTCGATGGTGTCGGAGCTCTCAACCTCCAGGGTAATGGT 185016 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || |||||||||||||| Sbjct 185015 CTTCCCAGTGAGGGTCTTGACAAAGATCTGCAT 184983 >seq777 Length=10791 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 |||||||| || | || || ||||| ||||||||||||| || |||| | || Sbjct 1741 AGCACCAGATGCAGTGTTGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTACGGCCATCT 1682 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || |||||||| || || || ||||| ||| | | |||||||| Sbjct 1681 TCGAGTTGCTTTCCGGCGAAAATTAGACGTTGTTGGTCTGGGGGAATTCCTTCCTTGTCT 1622 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | |||| ||||| || || | ||||| ||| Sbjct 1621 TGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGATTCAACTTCGAGGGTGATTGTT 1562 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| || |||||||| |||||||||||| Sbjct 1561 TTCCCGGTTAGGGTTTTCACGAAGATCTGCATC 1529 >seq8 Length=153299543 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | || || ||||| |||||| || || || ||||||||||| Sbjct 133641649 GAAACCACCACGGAGACGGAGGACAAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTC 133641708 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | ||| | | || || | |||||| ||||| || || |||| ||||||||| Sbjct 133641709 CGCCAGAGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGG 133641768 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 ||| | || ||||||||| ||||| ||| | || | | || | ||| | || Sbjct 133641769 GGGAATGCCCTCCTTGTCCTGAATCTTAGTCTTCACATTGTCGATAGTATCAGAACTCTC 133641828 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||||| || || || | || |||||||| |||||||| Sbjct 133641829 CACCTCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 133641879 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || | || |||| |||| || | |||||||||||| || Sbjct 133642373 TCCTTCTGGATGTTGTAATCAGCAAGGGTACGGCCGTCTTCAAGCTGCTTGCCTGCAAAG 133642432 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || |||||||| ||| | || |||||||| ||||| ||| | || | Sbjct 133642433 ATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTAATATTG 133642492 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | ||| || || | || || ||||| || ||||| ||||| ||| Sbjct 133642493 TCAATGGTGTCAGAGCTTTCAACCTCGAGAGTAATTGTTTTACCAGTGAGGGTTTTGACA 133642552 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 133642553 AAGATCTGCATC 133642564 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/196 (71%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||| || | ||| |||| | || ||||| ||||| || || || Sbjct 133642600 TTCCTTCTGGATGTTGTAATCAGCCAGGGTACGGCCATCTTCCAATTGCTTACCAGCAAA 133642659 Query 34258 AATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAG 34314 ||| |||| |||||||| | |||| | | ||||||||| || ||||| ||| | Sbjct 133642660 AATCAGCCTTTGCTGGTCTGGCGGG-ATACCCTCCTTGTC--CTGAATTTTGGCCTTAAC 133642716 Query 34315 ATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTT 34374 | | | || | |||| ||| || || | |||| || || || ||||| || || Sbjct 133642717 GTTGTCGATGGTGTCGGAGCTTTCCACCTCAAGGGTGACTGTCTTCCCAGTGAGGGTCTT 133642776 Query 34375 CACAAAGATCTGCATC 34390 |||||||||||||||| Sbjct 133642777 CACAAAGATCTGCATC 133642792 >seq12 Length=229934170 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || ||||| || || || || | |||| |||||||| || || ||||| | Sbjct 186924115 TCCACCACGTAGCCTGAGAACAAGATGAAGAGTAGACTCTTTCTGGATATTATAGTCCGC 186924174 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | |||||| || || || ||||||| ||| || || || Sbjct 186924175 AAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAATATGAGCCTCTGTTGATCTGGTGG 186924234 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||| || ||||||| || | || | | || | ||| | ||| || Sbjct 186924235 AATCCCCTCCTTATCCTGTATCTTTGTTTTCACATTGTCGATAGTATCTGAACTTTCCAC 186924294 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||| || || || || ||||| ||||| ||||||||||| Sbjct 186924295 CTCCAACGTGATTGTCTTCCCAGTTAGAGTCTTCACGAAGATCTGCAT 186924342 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| ||||||||||| | || ||| | || Sbjct 3485386 AGGACAAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCTAGTGTCCGGCCATCC 3485445 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGGCACGCTCTCCTTGTC 34296 || | |||||| ||||||||||| | || |||||||| || |||| | || |||||||| Sbjct 3485446 TCGAGCTGCTTACCTGCGAAAATCAACCTCTGCTGGTCCGGCGGG-ATGCCTTCCTTGTC 3485504 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | | || | |||| || || || || | || || || Sbjct 3485505 TTGAATCTTGGTCTTGACGTTGTCGATGGTGTCGGATGACTCTACCTCTAAGGTAATAGT 3485564 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || || ||||||||||||||||| Sbjct 3485565 CTTACCCGTCAGGGTCTTCACAAAGATCTGCAT 3485597 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | || || | || || | |||||| ||||||||| Sbjct 3077662 TCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGACCATCCTCGAGCTGCTTACCTGCGAAA 3077721 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || ||||||||| || | || |||||||| ||||| ||| | || | Sbjct 3077722 ATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTGGTCTTAACATTG 3077781 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | || || || || | || || || ||||| || || || |||||| Sbjct 3077782 TCGATGGTGTCCGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCACA 3077841 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 3077842 AAGATCTGCAT 3077852 >seq10 Length=205736368 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | || || ||||| || ||||| |||| Sbjct 339579 CCACCACGCAGACGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCT 339638 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| |||| || | |||||| || || || || | | |||||||| ||| Sbjct 339639 AGGGTACGGCCGTCATCAAGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGGGG 339698 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | |||| ||| || Sbjct 339699 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGTCGGAGCTTTCCACC 339758 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| || ||||| || ||||||||||||||||||||| Sbjct 339759 TCGAGGGTGATGGTCTTTCCGGTAAGGGTTTTCACAAAGATCTGCATC 339806 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 ||| || || || || | || || ||||| |||||| || || || ||||||||||| Sbjct 338663 GAAACCACCACGGAGACGGAGGACAAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTC 338722 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 | ||| | | || || | |||||| ||||| || || |||| ||||||||| Sbjct 338723 CGCCAGAGTCCTTCCATCTTCGAGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGG 338782 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 ||| | || ||||||||| ||||| ||| | || | | || | ||| | || Sbjct 338783 GGGAATGCCCTCCTTGTCCTGAATCTTAGTCTTCACATTGTCAATAGTATCAGAACTCTC 338842 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| |||||||| || || || | || |||||||| || ||||| Sbjct 338843 CACCTCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTCACAAAAATTTGCAT 338893 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || ||||| |||||||| || | || |||| |||| Sbjct 339366 AGCACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGGCCGTCC 339425 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||||||| || || | || |||||||| ||| | || |||||||| Sbjct 339426 TCGAGCTGCTTGCCTGCAAAGATCAACCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 339485 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | ||| || || | |||||| || Sbjct 339486 TGGATCTTGGCCTTGACGTTGTCAATAGTGTCAGAGCTTTCAACCTCGAGCGTGATTGTC 339545 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || ||||| | ||| ||||| |||||||||||| Sbjct 339546 TTTCCGGTCAAAGTCTTCACGAAGATCTGCATC 339578 >seq5 Length=217274494 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259 |||| || || || ||||| | |||| |||| | || || | |||||| || || || | Sbjct 129771662 CTTTTTGGATATTATAGTCTGCCAGCGTACGGCCATCTTCAAGCTGCTTACCAGCAAATA 129771721 Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGG 34319 | | ||||||||||| || | || ||||| || ||||| ||| | || | Sbjct 129771722 TCAAACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGAATCTTAGCCTTGACATTGT 129771781 Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379 | || | |||| | ||||| || || | || ||||| || || || || |||||||| | Sbjct 129771782 CAATGGTATCGCTGGATTCAACCTCAATGGTTATGGTCTTCCCTGTTAGGGTTTTCACGA 129771841 Query 34380 AGATCTGCATC 34390 |||| |||||| Sbjct 129771842 AGATTTGCATC 129771852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323065593785120