Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 192 5e-44 >seq2 Length=163962470 Score = 192 bits (212), Expect = 5e-44 Identities = 571/871 (66%), Gaps = 25/871 (3%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||||||||| ||| ||||| || | ||||||||| ||||||||||| || || ||| Sbjct 163233588 GACATAACTGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTCGTCTTCCCT 163233529 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCAT 16048 | ||| ||| ||||| ||||||| ||||| | || | ||| || || | Sbjct 163233528 TGTAAGCTAATCAGCTCCATCCAATCAAATGGATTCTGTGCATTATACATCTTCTCATAA 163233469 Query 16049 CCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAG 16108 ||||| | || |||||||| ||||||||||| || || | |||| ||||| | Sbjct 163233468 CCCAAAGCGTCTAACAATCTATCAGCCACAAATTCAATGTATTTACTCATCAAATCTCCA 163233409 Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 |||||||| | || | ||| | || || | ||| | ||||||||| || Sbjct 163233408 TTCATTCCCACCAAAGCACAAGGCAAGGCATCACACACAAACTCCCTTTCTATATCCACG 163233349 Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAAC 16228 || ||| | || | || ||| | || |||||| | || | | |||| Sbjct 163233348 GCGTCAGCAACAATTCCCCTCACT-CGCTCC---ACGGAGAGCTTCGTCC-TCAGCAAAC 163233294 Query 16229 ATTATA-----CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTG 16283 || | |||||||||||||| ||||| ||||||||||| || ||||| |||| Sbjct 163233293 TGTAAAGCAAGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTG 163233234 Query 16284 AAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATAT--AGCGGCAAATGA 16341 | || || | || ||||||| |||| ||||| | ||||||||| | | | || | Sbjct 163233233 AGAAGGTTAATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACT-- 163233176 Query 16342 ACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCT 16401 ||||| ||||| || |||||||| ||||| || ||||| |||||| | | | | Sbjct 163233175 TCCAGAGAAGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAG---T 163233119 Query 16402 AtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTT 16461 | || ||| ||||| |||||| || || || | | ||| || || | Sbjct 163233118 CTCCGAACCTTCAATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGT 163233059 Query 16462 CTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAG 16521 ||| ||||| || || || ||||| | ||| || || | || | || Sbjct 163233058 CTCAATTGCGCGGAACAACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAG 163232999 Query 16522 TAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATC 16580 ||||| ||||| || ||||| |||||||| || || || ||||| ||||| |||||| | Sbjct 163232998 CAAACTGTACATCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCA-C 163232940 Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640 || || | | ||| || || ||||| | || | || || ||| || | Sbjct 163232939 GCGCCTCAGCAACTTGCACATCTTTCATGAACCTCCCAGCGAGATTCTCCAAAACGATAC 163232880 Query 16641 CATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGA-- 16698 |||| |||||||| |||||||| | ||| | ||||| | |||| | | || Sbjct 163232879 CATCCGATGCTGCAAAGAACGCAAGCACGTGAGTGATAAAGTGCCTTTC---ACCGGACG 163232823 Query 16699 -AAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAG 16757 || ||| ||||| | ||| ||||||||||| ||||| |||||||||||| Sbjct 163232822 TCAGATTTTCCCAGTGACGGGTATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAG 163232763 Query 16758 AAGCAACAGCCTTTTTATACATTTTCCATAT 16788 | || | || || |||||||||| ||| || Sbjct 163232762 ATGCCATGGCTTTCTTATACATTTCCCAAAT 163232732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462502593662200