Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq668 86.0 1e-11 >seq668 Length=133065 Score = 86.0 bits (94), Expect = 1e-11 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| ||| |||| || | | || || || || |||| ||||| ||||||||| | Sbjct 40447 TGGACAGCGAGATTATATATGATAGGGACTTTGACTATGATTACTTTGGTTTCAAAACCC 40388 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 | |||| || || ||| | || |||||||| || | || ||| | || || ||| Sbjct 40387 TAGAGAGGTCTTACCTCTTAAAGATTGATGGAAAAGTTGTAGAAAGGCCACAACATATGC 40328 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGA 248942 ||||| |||| |||| ||||| ||||||||||| || || Sbjct 40327 TGATGAGAGTCTCTGTTGGGATCCACAAGGATGATATTGA 40288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073744016332736