Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 4e-14 seq2 87.8 2e-12 >seq1 Length=301019445 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| |||||||| || |||||||| ||| ||| || || |||||||| || ||| Sbjct 196654323 CAAGCAAAGTCACAATGGAGACCCTCATCCCTAGAAATGAGCTCATTTGAAAAAGTCAAT 196654382 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 ||||||||||| |||| ||||| | |||||| || ||| Sbjct 196654383 CCTGGCATCAAACCTCTCTTTTTCAGCCAAAAGATAGCA 196654421 >seq2 Length=163962470 Score = 87.8 bits (96), Expect = 2e-12 Identities = 365/567 (64%), Gaps = 23/567 (4%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || || ||||||||||| || | || || || || ||| | || ||||| || ||| Sbjct 163233285 AAGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTT 163233226 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 ||||| ||||| || |||| ||||| ||||||||||| | | ||| ||| || ||| Sbjct 163233225 AATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCAGAGAAG 163233166 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14380 || || || ||||| |||||| || | || || || |||| | | | | | Sbjct 163233165 AAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAG-----TCTCCGAAC 163233111 Query 14381 GAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438 | ||||| |||||||| | || || | || || || || ||||| | Sbjct 163233110 CTTCAATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTG 163233051 Query 14439 CATTAAATAA-ATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTATCAATAAGTAAGC 14495 | || || |||| ||| || | || | |||| ||||| | || | || || | Sbjct 163233050 CGCGGAACAACCTGTT-CTTTTCATCAGAATCCTTG--ATGTACGACTCCAACAGCAAAC 163232994 Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555 | ||||| ||||| || || || || ||||| || ||||| ||||| ||| | || | Sbjct 163232993 TGTACATCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCACGCGCCT 163232934 Query 14556 CTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615 | | ||| || ||| || || | || | ||| || ||| |||||||| Sbjct 163232933 CAGCAACTTGCACATCTTTCATGAACCTCCCAGCGAGATTCTCCAAAACGATACCATCCG 163232874 Query 14616 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTG---CTGAGTT 14672 |||||||| || || | | || | |||||| ||| |||| | | || | Sbjct 163232873 ATGCTGCAAAGAACGCAAGCACGTGAGTGATAAAG---TGCCTTTCACCGGACGTCAGAT 163232817 Query 14673 TTTTCCAAT--CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGC 14730 ||| ||| | ||| | ||| || | ||| ||||| ||| | ||||||||| || Sbjct 163232816 TTTCCCAGTGACGGGT--ATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGC 163232759 Query 14731 AACAGCTTTTTTATACATTACCCATAT 14757 | ||||| ||||||||| |||| || Sbjct 163232758 CATGGCTTTCTTATACATTTCCCAAAT 163232732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482335790296360