Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq10 107 1e-18 seq8 100 2e-16 seq3 98.7 8e-16 seq12 95.1 9e-15 seq7 84.2 2e-11 >seq10 Length=205736368 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | |||||| | |||||| || || || ||||| || |||||||| || Sbjct 187645147 CCACCACGCAGACGAAGTACAAGGTGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGCA 187645206 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| ||| ||||| ||||| || || |||| | ||| |||||||| || Sbjct 187645207 AGAGTTCTACCATCCTCCAACTGTTTCCCGGCGAAGATCAATCTCTGTTGATCTGGAGGA 187645266 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| |||| | || ||||| | ||| ||||||| | ||| Sbjct 187645267 ATTCCTTCCTTATCTTGGATTT-TAGCTTTGACGTTATCAATAGTGTCAGAGCTCTCAAC 187645325 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || | || || ||||||||||| ||||| || ||||| Sbjct 187645326 CTCAAGAGTAATTGTCTTCCCCGTCAATGTTTTCACAAAGATCTGCAT 187645373 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || || | ||||| ||||||||||| ||||||||||| || || Sbjct 3762256 TCCTCCCCTGAGCCTGAGAACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGC 3762197 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| || |||||||| |||||| || ||| | || ||||| || ||||| || Sbjct 3762196 CAAGGTTCGACCATCTTCCAGTTGTTTCCCAGCAAATATCAGTCTCTGCTGATCAGGCGG 3762137 Query 18218 CACGCCTTCCTTATC 18232 | |||||| ||||| Sbjct 3762136 TATGCCTTCTTTATC 3762122 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | |||||| || || || ||||| ||||||||||| || Sbjct 187644919 CCACCACGCAGGCGAAGGACAAGGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCA 187644978 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | ||| ||||| || || || || |||| | ||| ||||| || || Sbjct 187644979 AGAGTTCTTCCATCCTCCAACTGCTTTCCAGCGAAGATCAATCTCTGTTGGTCTGGAGGA 187645038 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||||||||| |||| | |||||| | ||| ||||||| | ||| Sbjct 187645039 ATTCCTTCCTTATCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACC 187645098 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || || | || || ||||| ||||| ||||| || ||||| Sbjct 187645099 TCAAGAGTAATTGTCTTCCCAGTCAAAGTTTTCACAAAGATCTGCAT 187645145 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || |||||||| || || |||||||| || || | || | | ||| Sbjct 187644478 AGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAATCTGCTAGAGTCCTTCCATCC 187644537 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || ||| | || | ||||| || ||| || | ||||||||||| Sbjct 187644538 TCAAGCTGTTTCCCGGCAAAAATCAACCTTTGCTGGTCCGGTGGGATTCCTTCCTTATCT 187644597 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| |||||| ||| |||| ||||||| | Sbjct 187644598 TGAATTTTAGCCTTGACATTGTCAATGGTGTCAGAACTCTCCACCTCAAGGGTGATGGTC 187644657 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||||||| |||||||| || ||||| Sbjct 187644658 TTCCCTGTCAATGTCTTTACAAAGATCTGCAT 187644689 >seq8 Length=153299543 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || || || | |||||| ||||||||||| |||||||||||||| | Sbjct 145827425 TCCTCCCCTGAGCCTCAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCAGT 145827484 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| || ||||||||| ||||| || ||| | || ||||| || ||||| | Sbjct 145827485 CAGGGTTCGACCATCTTCCAACTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGAAGC 145827544 Query 18218 CACGCCTTCCTTATCGGCAATTT 18240 | |||||| ||||| ||||| Sbjct 145827545 TATGCCTTCTTTATCCTGAATTT 145827567 >seq3 Length=261510930 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || || | |||| |||||| |||||||||||||||| ||||| || || Sbjct 37116928 TCCTCCTCTGAGCCTCAAAACCAAGTGAAGCATTGATTCTTTTTGAATATTGTAATCAGC 37116987 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| || |||||||||||||||||| || | || ||||| || ||||| | || Sbjct 37116988 TAGAGTTCGACCATCTTCCAATTGTTTGCCACCAAAAATTAGTCTCTGCTGATCGAGAGG 37117047 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGAC-CTGTGCAACAGTGTCACCGGGCTCG- 18275 | ||||| || || ||||| |||||| ||| | || |||| | | | Sbjct 37117048 TATCCCTTCTTTGTCTTGAATTTTGGCCTTGACATTGTCGATCA-TGTCGCTACTTTTGA 37117106 Query 18276 GTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||| ||||||| |||| | ||| | |||||| || || || | ||| Sbjct 37117107 CTTCCAAGGGTGATGGTTTTCCTGGTTAGTGTTTTGACGAAGATCTACAT 37117156 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || || | |||| |||||||||||||||||||||||| ||||| || || Sbjct 37145358 TCCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTTTGAATATTGTAATCAGC 37145417 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACG-G 18216 | ||| | ||||||||| |||||||| || | || ||||||| || | |||| | Sbjct 37145418 TAGAGTTCGGCCATCTTCCAACTGTTTGCCACCAAAAATTAGTCTTTACTGGT-CACGCG 37145476 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | | || || || || ||||| |||||| | | | ||||| | ||| Sbjct 37145477 GTATTCCGTCTTTGTCCTGAATTTTGGCCTTGACATTGTCGATTGTGTCGCTACTTTCGA 37145536 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||| ||| | || ||||| | || || || || || ||||| Sbjct 37145537 CTTCAAGGGTAATGGTCTTCCCGGTTAGAGTCTTGACGAAGATCTGCAT 37145585 >seq12 Length=229934170 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| ||||| || ||||| ||||||||||| || | |||| ||| |||| Sbjct 186925044 AGGACAAGGTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCAAGTGTTCTACCATCT 186925103 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | ||||| || ||| |||| || || || ||||| | | ||| ||||| || Sbjct 186925104 TCAAGCTGTTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGTGAAATGCCCTCCTTGTCT 186925163 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || ||||| | ||| ||||| | |||| |||| || || | Sbjct 186925164 TGAATTT-TAGCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGT 186925222 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || ||||||| ||||| || || ||||||||| Sbjct 186925223 CTTTCCGGTCAGAGTTTTAACGAATATTTGCATT 186925256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || || || ||||| ||||||||||| || | ||| | |||||| | ||| Sbjct 186925281 TGGAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCAAGAGTTCGTCCATCTTCAAGCTGT 186925340 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| || || || ||||| ||| | ||| |||||||| ||||| | Sbjct 186925341 TTTCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGGATGCCCTCCTTATCTTGAATTT-T 186925399 Query 18243 TGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||||| | | || ||| |||||| |||| |||| ||||||| | || ||||| Sbjct 186925400 TGCTTTAACGTTGTCAATGGTGTCAGAACTCTCGACCTCAAGGGTGATGGTCTTTCCGGT 186925459 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 186925460 GAGGGTCTTAACAAAGATCTGCAT 186925483 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| ||||| |||||||| || ||||||||||| || || | || | | ||| Sbjct 117694227 AAGCACCAAATGAAGGGTTGATTCCTTCTGAATGTTGTAATCTGCAAGGGTCCTTCCATC 117694168 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | |||||| || ||| |||| | ||| || || || || | | ||||| || Sbjct 117694167 TTCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGAATCCTCTCCTTGTC 117694108 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| | |||| | ||| ||| ||| | |||| ||||| ||||||| | Sbjct 117694107 TTGGATTTTCGCCATGACATTGTCAATAGTATCAAAGCTCTCGACTTCAAGGGTGATGGT 117694048 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | || || ||||| || ||||| Sbjct 117694047 CTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 117694015 >seq7 Length=222112641 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || || | |||| |||||||||||||||||| || || ||||| || || Sbjct 220953978 TCCTCCTCTGAGCCTCAAAACCAAGTGAAGTGTTGATTCTTTCTGGATATTGTAATCAGC 220954037 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 || ||| || ||||||||| |||||||| ||| | || || || || || || Sbjct 220954038 CAGAGTTCGACCATCTTCCAACTGTTTGCCAGCAAAAATTAGCCTCTGCTGGTC 220954091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379336477964115