Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq3 91.5 1e-13 >seq3 Length=261510930 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24829 ATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCG 24888 ||||||||||| || || || || ||||||| || || || ||| | || |||||| Sbjct 37145588 ATCATGCAGATCTTCGTCAAGACTCTAACCGGGAAGACCATTACCCTTGAAGTCGAAAGT 37145529 Query 24889 AGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 ||||||| | || | ||| |||| |||||| | ||||| || ||||| |||| Sbjct 37145528 AGCGACACAATCGACAATGTCAAGGCCAAAATTCAGGACAAAGACGGAATACCGCGTGAC 37145469 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 ||| || | |||| | || |||||||| |||||||| | ||| | |||||| Sbjct 37145468 CAGTAAAGACTAATTTTTGGTGGCAAACAGTTGGAAGATGGCCGAACTCTAGCTGATTAC 37145409 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTT 25043 | || || ||||| | || ||||| || || || Sbjct 37145408 AATATTCAAAAAGAATCAACACTTCACTTGGTTTT 37145374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418295705423840