Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_003278.1 Length=35580 Score E Sequences producing significant alignments: (Bits) Value seq1351 545 5e-151 >seq1351 Length=16866 Score = 545 bits (604), Expect = 5e-151 Identities = 745/1025 (73%), Gaps = 24/1025 (2%) Strand=Plus/Minus Query 31701 GTCGGCAACGTCGAGGCCCATTGGGAATGCCTTGGTGGCATCGACGTGGACCCGGCCGGC 31760 || ||| || | |||| ||||| ||| | || ||| | ||||| ||| ||| | Sbjct 15948 GTTGGCCACCTGCAGGCGGATTGGCGCTGCATCGGCGGCGTAGACGTTGACGCGGGTGCG 15889 Query 31761 CTCCGCGACTTCGAGCGCCTGGCCGGTGTCCCGGGCACCCTGCTGGACCTGTTCACCCGC 31820 | ||||||||| | || ||||||||||| || || || | | |||| || ||||||||| Sbjct 15888 TTGCGCGACTTCCATCGGCTGGCCGGTGTACCAGGTACGCAGATGGATCTTTTCACCCGC 15829 Query 31821 GACCAATACATCCGCTTCCATGGAACGGAGCCTCCCGCCGGTTGGCGGGAGGCAACCCCG 31880 || ||||||||||||||||| || | |||||| || || || ||||||||||| ||| Sbjct 15828 GAGCAATACATCCGCTTCCACGGTAAGGAGCCGCCTGCAGGCTGGCGGGAGGCGTTGCCG 15769 Query 31881 GAGGAAATCCGCCGCGCCGCCGGCGGGCGCCGACCGGATGCCGTGTTCATCAGCTCGCCC 31940 || || || || || ||||| ||| | || || |||||||||||||| || Sbjct 15768 GAAGACATTCGGCGTGCCGCTGGCTTCCAAGATCCTGACACCGTGTTCATCAGCAGCCCA 15709 Query 31941 TGCAAAGGCGCCAGCGGCCTGCTGTCGGAGAAGATGAGCCTGACTCCGAAGTACCAGGCG 32000 |||||||| || ||||| || || || || | ||||||||| || || || |||||| Sbjct 15708 TGCAAAGGGGCGAGCGGGCTTCTTTCCGAAGCCAAGAGCCTGACACCCAAATATCAGGCG 15649 Query 32001 CTGAACGAGTTGACGCTGCGCTGCATCTGGCTGATGGGCGAGGCATGGGCTGATGACCCG 32060 |||||||| |||||||||| ||| | ||||| ||| |||| || ||| || |||| Sbjct 15648 TTGAACGAGCTGACGCTGCGTTGCGTGTGGCTCATGTGCGAAGCCTGGCGGCATAACCCC 15589 Query 32061 GTGCCGCTGATCGTCTTCGAGAACGTCCCGCGTCTGGCGAGCCGCGGCCGGCACCTGCTG 32120 ||| || |||| |||||||||||||| ||| | ||||| ||||| ||||| ||| |||| Sbjct 15588 GTGTCGTTGATTGTCTTCGAGAACGTGCCGAGGCTGGCCAGCCGTGGCCGTCACTTGCTC 15529 Query 32121 GACCAGATCAA-CAG--CCTGCTCGGTGGCTTCGGCTACGCCGTGGCGGAAACCACTCAC 32177 || ||||| ||| ||||| || || |||||||||||| ||||||||||| ||| Sbjct 15528 GATCAGATTGCGCAGATCCTGCA--GTT-CTACGGCTACGCCGTTGCGGAAACCACGCAC 15472 Query 32178 GACTGCGGCGAGCTGGGCGGTCTGGCCCAGTCGCGGAAGCGCTTCCTGCTGGTGGCGCGG 32237 |||||||||||||||||||| ||||| || || ||||| || | ||||| || || Sbjct 15471 GACTGCGGCGAGCTGGGCGGACTGGCGCAAAGCCGCAAGCGGTTTTTACTGGTCGCTCGC 15412 Query 32238 CACGTCGAGAAAGTGCCGCCCTTCCTGTACGAGCCGGAGAAGAAGAGCCTGCGCGCCGTC 32297 ||| | ||||| |||||||| || || ||||| || ||||| |||| | ||| Sbjct 15411 CACATGGAGAAGGTGCCGCCATTTCTCTACGAACCCAGCAAGAAATCGCTGCAGCCGGTC 15352 Query 32298 GGCGACATCCTCGGCCGCATGCCGCTGCCCGGCGATATCGACGCCGCCGGCCCGATGCAC 32357 || | | || || || ||||| |||| ||||| || || || || |||||||| Sbjct 15351 GGGGCTGTGCTGGGTCGTATGCCAATGCCTGGCGACATTGAGCGGGCAGGGCCGATGCAT 15292 Query 32358 CGTGTGCCATCCCTGCAGTGGAAGACCTGGGTTCGCCTGGCACTGGTGCGAG-CCGGCAG 32416 || | || || ||||| ||||| || ||||| ||||| || |||| |||| |||| | Sbjct 15291 CGCATTCCCTCGCTGCAATGGAAAACGTGGGTGCGCCTTGCCTTGGT-CGAGGCCGGTAA 15233 Query 32417 CGACTGGCGCAGCCT-GAACGACCTCGCCGTCGAGGACGGCTACCTGCGCGATCTGATCA 32475 |||||||||||||| || || | | ||| |||||||||||||||| ||||| | || | Sbjct 15232 GGACTGGCGCAGCCTTGATCGTC-TGGCCATCGAGGACGGCTACCTACGCGACTTCATGA 15174 Query 32476 TCGT-CCCGA--AATACCGGGCTGGCTACATGGGCGTGCACGGTTGGAACGACAGCACGG 32532 |||| ||||| ||| |||| ||| |||| || | | ||| || || || Sbjct 15173 TCGTGCCCGAGGCATA---TTCTGGTTACTTGGGTGTCAATCGCTGGGGGGATTCCATGG 15117 Query 32533 GCACCATCGCCGGTCGCAGCAGCCCCACGAACGGCGCATTCTCTGTCGCGGACCCGCGC- 32591 |||| ||||||| | | |||| || |||||||| || || ||||| || || ||| Sbjct 15116 GCACTGTCGCCGGACAGTCCGGCCCAACCAACGGCGCGTTTTCGGTCGCAGATCCACGCA 15057 Query 32592 GC---GCCGGCAAACGCCCTGCAATACCAGCAGTACGGCGTGCGCCGCTGGACCGACACC 32648 || || || |||| |||||| |||||||||||||| | |||||| |||| | Sbjct 15056 GCAAAGCTGG----AGCCCAGCAATATCAGCAGTACGGCGTCAGACGCTGGGAAGACAGC 15001 Query 32649 TCGGGCGCCATCATCGGCGTCAAGTCGCCCGGCCAAGGCACGTACTCCGTCGCCGATCCC 32708 ||||| ||||| ||||| || || || || ||||| || | | ||| |||||||| Sbjct 15000 AGCGGCGCAATCATTGGCGTGAAATCACCAGGTCAAGGGACATTCAGCGTTGCCGATCCG 14941 Query 32709 CGCGG 32713 ||||| Sbjct 14940 CGCGG 14936 Score = 271 bits (300), Expect = 2e-68 Identities = 309/412 (75%), Gaps = 2/412 (0%) Strand=Plus/Minus Query 32956 CGTATCTCACTGGCGGCCACTACGGCGTAGTTGGGTTCGACCAATCCGCCGGCGCGGTGT 33015 ||||||| ||||| ||||| |||||||| | || | || | | ||||| || |||| Sbjct 14795 CGTATCTGACTGGGGGCCATTACGGCGTCATCGGCTGGGAAAACCCAGCCGGTGCCGTGT 14736 Query 33016 CGGCCAGTGCGCGGCACGACAACGGTCGATGGAGCGTGGCCGATCCGCGCATGCCGAAGG 33075 ||||||||||||| || |||||||| ||||||||||| |||||||| || | || | Sbjct 14735 CGGCCAGTGCGCGCCAAGACAACGGGCGATGGAGCGTTGCCGATCCACGGCTACCCGCCG 14676 Query 33076 CGAACGACCGGCTGACCTGCATCATCCAGTCGCTGGATGGCACCTGGCACAGGCCGTTTA 33135 ||||||||||| | || ||||| || || || |||||||||||| | || || | Sbjct 14675 TCAACGACCGGCTAGCGTGTGTCATCGAGAGTCTAGACGGCACCTGGCACCGCCCATTCA 14616 Query 33136 CCACCCTGGAACTCGCCGCGCTGCAGAGCTTGGTCGACCCCGAAGAGCAGTTGGTCCTCG 33195 |||| || ||| | ||||||||||| || |||| ||||| ||||| ||| | | || | Sbjct 14615 CCACGCTTGAAATGGCCGCGCTGCAAAGTCTGGTAGACCCGGAAGAACAGCTAGAGCTGG 14556 Query 33196 ACGGCCTGAGCGA-CAGCGACTGGCGCGAGCGGATCGGCAATGCGGTTCCGCCGGCTGCG 33254 |||| |||| || ||| | ||||||||||| |||||||| || || ||||| | |||| Sbjct 14555 ACGGTTTGAGTGATCAG-GCTTGGCGCGAGCGAATCGGCAACGCTGTACCGCCCGATGCG 14497 Query 33255 GCCGAGGCCATCGCCGGCGTGATGGGCACCACCCTGTTGTTGGCTGAGGCTGGCGAGACC 33314 |||||||| || ||||| || |||| ||| ||| || |||| || ||||| ||| Sbjct 14496 GCCGAGGCGATTGCCGGTGTTATGGCTCGCACACTGCTGCTGGCCAAGCAGGGCGAAACC 14437 Query 33315 TTCCTGCTCAGTAGCACGCCGATCTGGGTGCGTCAGGTCGCCGTTGGACTGA 33366 ||| ||||||| || | |||||| ||||| || | | | || || || |||| Sbjct 14436 TTCTTGCTCAGCAGTATGCCGATATGGGTTCGACCGATTGCGGTCGGCCTGA 14385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113732202580308