Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq1351 226 1e-54 >seq1351 Length=16866 Score = 226 bits (250), Expect = 1e-54 Identities = 567/852 (67%), Gaps = 31/852 (4%) Strand=Plus/Plus Query 43170 AAGTCCCGCAGGTTGCCGTCCTCGACGGCGAGCTTGTTGAGCGAGCGCCAATCCGAGCCA 43229 ||||| || |||| ||||||||||| ||| || | || |||||| ||| || Sbjct 15179 AAGTCGCGTAGGTAGCCGTCCTCGATGGCCAGACGATCAAGGCTGCGCCAGTCCTTACCG 15238 Query 43230 GCCTCGACGAAGGCAAGGCGCACCCACGTCTTCCACTGCAGCGAAGGAACACGATGTAGG 43289 |||||||| |||||||||||||||||||| ||||| |||||||| |||| ||||| | Sbjct 15239 GCCTCGACCAAGGCAAGGCGCACCCACGTTTTCCATTGCAGCGAGGGAATGCGATGCATC 15298 Query 43290 GGGCC-GCCTG--CAGGGTCGCCTGGCAGCGGCAGTTTCTCAAGGATTTCGCCGA-CGCC 43345 || || ||| | || |||||| |||| |||| | || | | |||| || | Sbjct 15299 GGCCCTGCCCGCTCAATGTCGCCAGGCATTGGCATACGACCCAGCACAGCCCCGACCGGC 15358 Query 43346 TCGCAGGCGCTTCTTTTCGGGCTCGTAAAGGAACGGAGGCACAGTCGGTTCGTGGCGCGC 43405 | |||| ||||| ||| ||||| || || || ||||| || |||||| || Sbjct 15359 T-GCAGCGATTTCTTGCTGGGTTCGTAGAGAAATGGCGGCACCTTCTCCATGTGGCGAGC 15417 Query 43406 AACAAGCAGGAAGCGCTTGCGGCTCTGACCCAAACCGCCGATCTGACCGCAGTCGTGGGT 43465 || || | || ||||||||||| || ||| ||||| | || ||||||||||| || Sbjct 15418 GACCAGTAAAAACCGCTTGCGGCTTTGCGCCAGTCCGCCCAGCTCGCCGCAGTCGTGCGT 15477 Query 43466 GGTCTCGGCGACGGCGAAATTGTAGCTCCGCAG---CAGGGCAATGATCTGATCGAGCAA 43522 ||| || || |||||| | |||| | |||| | | ||| |||||||||||||| Sbjct 15478 GGTTTCCGCAACGGCGTAGCCGTAGAACTGCAGGATCTGCGCA---ATCTGATCGAGCAA 15534 Query 43523 CTTGCGGCCACGGTTCATGATGCGCGGCACATTTTCGAAAATGATCAGCTTGGGAAGCTT 43582 | ||||||||| | | | |||||| || ||||| | |||| | | || Sbjct 15535 GTGACGGCCACGGCTGGCCAGCCTCGGCACGTTCTCGAAGACAATCAACGACACGGGGTT 15594 Query 43583 GTCCTTGAAGGCTTCCAGCATCAGCCACACGCCGCGCAACGTCAGCCGATTGAGGGCCTG 43642 | | ||||||| ||| |||||||||| |||| ||||||| || | ||||| Sbjct 15595 ATGCCGCCAGGCTTCGCACATGAGCCACACGCAACGCAGCGTCAGCTCGTTCAACGCCTG 15654 Query 43643 ATACTTGGCGGTC--GCGCTCGACTGCTCGGACAGCAAGCCGGAGAAACCTTTGCATGGA 43700 ||| |||| ||| || || | || ||||| || | ||| ||||||||||| Sbjct 15655 ATATTTGGGTGTCAGGCTCTTGGCT--TCGGAAAGAAGCCCGCTCGCCCCTTTGCATGGG 15712 Query 43701 GCGGACAAGAACACGATATCGGGGAACTCGCCATGC-GCTGCGCGCCGAATGTCGTCCGG 43759 | | ||||||| | || ||| || | | | || || ||||||||||| ||||| Sbjct 15713 CTGCTGATGAACACGGTGTC-AGGATCTTGGAAGCCAGCGGCACGCCGAATGTCTTCCGG 15771 Query 43760 TACCGCCTGCTGCCAATCGGGATCAGGGTCGCGACTGTGAAAGGCCCGGTACTGCTCCAG 43819 | ||||| | |||| | | | || || || ||| ||| ||| ||||| | Sbjct 15772 CAACGCCTCCCGCCAGCCTGCAGGCGGCTCCTTACCGTGGAAGCGGATGTATTGCTCGCG 15831 Query 43820 GTCGAACAGATCGAGCAGGGTGCCGGGAACGCCGGCAAGGCGCGTGAAATCACGGATGGC 43879 | ||| ||||| | | | || || || || ||||| || || ||| || || | || Sbjct 15832 GGTGAAAAGATCCATCTGCGTACCTGGTACACCGGCCAGCCGATGGAAGTCGCGCAACGC 15891 Query 43880 CGCCGGATCGTTGTCGATGCCCCCGATGCAGCGGAACTTGGCATTCAGACTACCGACACG 43939 ||| || ||| | ||| ||||||||||| | | || | ||| || | Sbjct 15892 ACCCGCGTCAACGTCTACGCCGCCGATGCAGCGCCAATCCGCCTGCAGGTGGCCAA---- 15947 Query 43940 AGCCGATCCCTT-------GTTGAAGCCTTTGGCGCCGGCACCGAGCCCGCAAAACAGAT 43992 ||||| ||| ||||||||| ||||| ||| |||| | |||||| | | || Sbjct 15948 ---CGATCTCTTTGTTACGGTTGAAGCCCTTGGCACCGCCACCCAACCCGCAGCAGAAAT 16004 Query 43993 GAAAGTGCGTGA 44004 |||||||| ||| Sbjct 16005 GAAAGTGCTTGA 16016 Score = 105 bits (116), Expect = 2e-18 Identities = 172/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 41868 GCGATCGGCTGCACCCAAATCGGCTGATTAGACAGCATGAACGTCTCGCCGGTCATGGCG 41927 || ||||| | ||||| |||||| | | |||| ||| || ||||| | |||| Sbjct 14396 GCAATCGGTCGAACCCATATCGGCATACTGCTGAGCAAGAAGGTTTCGCCCTGCTTGGCC 14455 Query 41928 AGCAGCAGTGTGGTTCCCATAACGTCGGCGATCGCAGTCGCCGCATCCGGAGGTACCGCG 41987 |||||||||||| ||||||| |||| ||||| |||||||| || ||||| ||| Sbjct 14456 AGCAGCAGTGTGCGAGCCATAACACCGGCAATCGCCTCGGCCGCATCGGGCGGTACAGCG 14515 Query 41988 TTCCCGATGCGCTCTCGCCAAGCGGAATCGGACTGGCCGTCGAGGGTGAATATCTCGTCT 42047 || ||||| ||||| |||||||| ||| | ||||| || | || || Sbjct 14516 TTGCCGATTCGCTCGCGCCAAGCCTGATCACTCAAACCGTCCAGCTCTAGCTGTTCTTCC 14575 Query 42048 GGATCAACGAGGCTCTGCAACGCCGCTAACTCGAGAGTGGTGAACGGACGATGCCACGTG 42107 || || || || || |||| ||| || | || || |||||||| || || ||||| ||| Sbjct 14576 GGGTCTACCAGACTTTGCAGCGCGGCCATTTCAAGCGTGGTGAATGGGCGGTGCCAGGTG 14635 Query 42108 CCATCAAG 42115 || || || Sbjct 14636 CCGTCTAG 14643 Score = 86.0 bits (94), Expect = 2e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 42806 GCGCGGATCGGCAACGGAGAACGTGCCTTGGCCGGGTGACTTCACGTTGATCACAGCACC 42865 |||||||||||||||| ||| || ||||| || ||||| |||||| || | || || Sbjct 14938 GCGCGGATCGGCAACGCTGAATGTCCCTTGACCTGGTGATTTCACGCCAATGATTGCGCC 14997 Query 42866 GCTAGGCTCTTCCCATTCGCGGACGCCGTATTGCTGGTATT-CGAGGCTGCCGGCCGGCC 42924 ||| |||||||| | ||||||||| ||||| |||| | |||| || || | Sbjct 14998 GCTGCTGTCTTCCCAGCGTCTGACGCCGTACTGCTGATATTGCTGGGCT-CCAGCTTTGC 15056 Query 42925 CGCGAGGATCTGCGACCGAGAACG 42948 ||| |||||||||||||| |||| Sbjct 15057 TGCGTGGATCTGCGACCGAAAACG 15080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183606052547772