Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 134 1e-26 seq668 102 8e-17 seq12 98.7 9e-16 >seq2 Length=163962470 Score = 134 bits (148), Expect = 1e-26 Identities = 384/583 (66%), Gaps = 8/583 (1%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 || || ||||||||||| || ||||||||||| || || | ||||| || || ||| Sbjct 163233285 AAGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGTT 163233226 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG--CAGCAAATGAACCAGAAA 11744 ||||| ||||| || |||| ||||| | ||||||||| | ||| || | ||||| | Sbjct 163233225 AATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTT--CCAGAGA 163233168 Query 11745 AGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTT-GTTGCTA 11803 |||| || || || ||| ||||| || || | | || || | || | || Sbjct 163233167 AGAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGTCTCCGAACCTT 163233108 Query 11804 GATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCG 11863 | ||||| ||||| | || ||||| | ||||| || || || || ||| Sbjct 163233107 CA-ATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTGCG 163233049 Query 11864 TTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923 || || | ||||| | ||| | | || | || | | ||||| ||| Sbjct 163233048 CGGAACAACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTAC 163232989 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983 || || ||||| ||||| || ||||| |||||||||||||||||| || ||||| | | Sbjct 163232988 ATCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCACGCGCCTCAGCA 163232929 Query 11984 CACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 || ||||| ||| || || | || | |||||| || |||||||| | Sbjct 163232928 ACTTGCACATCTTTCAT-GAACCTCCCAGCGAGATTCTCCAAAACGATACCATCCGATGC 163232870 Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCA 12102 |||||| || || || | || | ||||||| |||| | || | || ||||| Sbjct 163232869 TGCAAAGAACGCAAGCACGTGAGTGATAAAGTGCCTTTCACCGGACGTCAGATTTTCCCA 163232810 Query 12103 ATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG 12162 | | ||| |||||||| ||||||||| | ||||||||| ||||| | || Sbjct 163232809 GTGACGGGTATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGCCATGGCTTT 163232750 Query 12163 TTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 |||||||||| ||| || | |||||| ||| ||||| ||| Sbjct 163232749 CTTATACATTTCCCAAATCTGTGGATACTGAATTGGGAACATA 163232707 >seq668 Length=133065 Score = 102 bits (112), Expect = 8e-17 Identities = 172/245 (70%), Gaps = 8/245 (3%) Strand=Plus/Plus Query 38395 GACAT--TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACC 38452 ||||| ||||||| ||||||||| || ||||| | || ||||| ||||| |||||| Sbjct 40190 GACATACTTGAGGCCTTGGAGTTCCAGCATTAAAAAGAGTTGGAGAAGCATGAGTGAACC 40249 Query 38453 ATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATAC 38512 || ||| |||| ||| ||| || | || || || |||||| | ||| || | Sbjct 40250 ATCTTTGAGACATCAAATGATACGTCTTGATGGCAGATTCAATATCATCCTTGTGGATCC 40309 Query 38513 CTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT---ATTATTCTGTT 38569 | | ||| || ||||| |||||||||||||| ||||||| | ||| || | || || Sbjct 40310 CAACAGAGACTCTCATCAGCATATGTTGTGGCCTTTCTACAACTTTTCCATCAATC--TT 40367 Query 38570 TAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTAT 38629 |||| || || || | |||| ||||| | ||||| ||| ||| | | || |||| Sbjct 40368 TAAG-AGGTAAGACCTCTCTAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCCCTAT 40426 Query 38630 CGTAT 38634 | ||| Sbjct 40427 CATAT 40431 >seq12 Length=229934170 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 38400 TTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTC 38459 |||||| |||||| || || ||||||| ||| ||||||||||| ||||||| || Sbjct 176959966 TTGAGGTCTTGGAGTGCCAGCATTAAATAGTGTTGGAGATGCATGAGTGAACCAGCATTG 176959907 Query 38460 CGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGA 38519 |||| ||| |||||| | || ||| || ||||| | ||| || || | ||| Sbjct 176959906 AGACATCAAATGATATGTCTTGATGACAGATTCAATATCTTCCTTGTGGATTCCAACAGA 176959847 Query 38520 TACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTT 38558 ||| ||||| ||||| |||||||| ||||||| ||||| Sbjct 176959846 TACTCTCATCAGCATGTGTTGTGGCCTTTCTACAATTTT 176959808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468515271376880