Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 seq668 98.7 1e-15 >seq2 Length=163962470 Score = 150 bits (166), Expect = 2e-31 Identities = 384/583 (66%), Gaps = 6/583 (1%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 ||| || || ||||| ||||| | ||| ||||| || ||| || || || || || || Sbjct 163233286 CAAGCAAGCAAAATCACAGTGCAAACCTTCGTCCCTCGAAATCAACTCATTTGAGAAGGT 163233227 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAA 36273 | ||| ||||||| || | |||||| | ||||||||| || || |||||| || Sbjct 163233226 TAATCCAGGCATTAACCCTCTCTTTTTCAACCAAAATATCGAACAGAAACTTCCAGAGAA 163233167 Query 36274 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTC 36330 |||||| ||||| || ||||| || | | | ||| || || | | || || Sbjct 163233166 GAAAATCCCTTCAACACAAGCAAAAGCCACCAAACGCTCAGCAAAAGTCTCCGAACCTTC 163233107 Query 36331 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGC 36390 | ||||| ||||||| | |||||||| | || ||||| || ||||| || || Sbjct 163233106 A---ATCCAACGGAGAGCCCATTTCGCCTTCTTCTCAACGCAAGGGATAGTCTCAATTGC 163233050 Query 36391 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATA 36450 || | ||| ||||||| | ||| || | || | || | || | ||| || Sbjct 163233049 GCGGAACAACCTGTTCTTTTCATCAGAATCCTTGATGTACGACTCCAACAGCAAACTGTA 163232990 Query 36451 CATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGT 36510 ||| || ||||| || || ||||| || ||||||||||| |||||| | ||||| | Sbjct 163232989 CATCTCAGAATGGATATTCTCAATAGCAATTTGAAATCCATAGAAAGCACGCGCCTCAGC 163232930 Query 36511 AATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGC 36570 || || || ||| | || | | || | ||| || || || || || || Sbjct 163232929 AACTTGCACATCTTTCATGAACCTCCCAGCGAGATTCTCCAAAACGATACCATCCGATGC 163232870 Query 36571 TGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCA 36630 |||||| ||||| | || || | ||||| | |||| | || || || | ||| Sbjct 163232869 TGCAAAGAACGCAAGCACGTGAGTGATAAAGTGCCTTTCACCGGACGTCAGATTTTCCCA 163232810 Query 36631 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 | | | |||| |||| ||| |||||||| | |||||||| |||||| || || Sbjct 163232809 GTGACGGGTATCGGCCGATAAATCGACTTCTTCAGCAGTCCAAAAAGATGCCATGGCTTT 163232750 Query 36691 TTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATA 36733 |||||||| | ||| || | |||| |||||||| || ||| Sbjct 163232749 CTTATACATTTCCCAAATCTGTGGATACTGAATTGGGAACATA 163232707 >seq668 Length=133065 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||| || || | |||| ||| |||| |||| | || | | ||| |||||||| ||| Sbjct 39893 CCTCCTTGGTCAACATATCGAGCAGTGTCATTAAATACACGTAGCATGGGAATAATTCCA 39952 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || ||||| ||||| ||||| ||||| || ||| | |||||||||| | ||| Sbjct 39953 TTTGATGTCCCATTTGTCCCACGAATATAACTCCCAGTACCACGAATATTGTGCACAGAT 40012 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | || ||||| || || |||| || | || || || | |||||||| ||| Sbjct 40013 ACTCCAATTCCTCCAGCAGATTTACTAATAACAGCACACTCCTTAAGAGTATCATATATG 40072 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 ||||| ||||||||||| ||||| | || || |||||| Sbjct 40073 CCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 40114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658159414410680