Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capsicum_20annuum_20[refseq_20GCF_5F000710875.1_202015-03-11] 1,627 sequences; 2,935,884,163 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq12 111 2e-19 seq10 96.9 3e-15 seq8 84.2 2e-11 seq9 82.4 8e-11 >seq12 Length=229934170 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| ||||| ||||| || || | ||| || ||||| ||||| Sbjct 186925052 GTGAAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCAAGTGTTCTACCATCTTCAAGCTG 186925111 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| |||||| ||||||| | |||||||| || | ||||| || ||||| ||| ||| Sbjct 186925112 TTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGTGAAATGCCCTCCTTGTCT-TGAATTT 186925170 Query 139681 TTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 | | ||| | | || || |||| | | ||| ||||||| || | ||||| |||| Sbjct 186925171 TAGCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGG 186925230 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 ||| ||||| |||||||||||||| Sbjct 186925231 TCAGAGTTTTAACGAATATTTGCAT 186925255 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || || || | || ||||| || || |||||||| || | || || Sbjct 186924354 AAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAGTTCTG 186924413 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 || || || |||||||||||| | |||| ||| |||||||| || || || || ||| Sbjct 186924414 CCATCCTCAAGTTGTTTACCAGCAAAAATCAAACGCTGCTGATCTGGGGGAATCCCCTCT 186924473 Query 139667 TTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTC 139726 ||||| ||| ||| ||| | | || | || || | ||| ||||| | ||| Sbjct 186924474 TTGTCTTGGATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACCTCCAAGGTA 186924533 Query 139727 ACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||||| || ||||| || || || || |||||||| Sbjct 186924534 ATCGTCTTCCCAGTCAAAGTCTTAACAAAAATTTGCAT 186924571 >seq10 Length=205736368 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | || || || | || |||||||| || ||||| ||||| Sbjct 187644235 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATGTTGTAATCAGCA 187644294 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || ||| || || ||||| || |||||| | |||| ||| ||||| || || || Sbjct 187644295 AGAGTCCTCCCATCCTCAAGCTGCTTGCCAGCAAAAATCAAACGCTGCTGGTCTGGTGGA 187644354 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| ||| ||| | | || | ||||| | ||| ||| Sbjct 187644355 ATCCCTTCTTTGTCTTGGATCTTTGCTTTCACATTATCGATGGTGTCTGAACTCTCAACC 187644414 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||| || ||||| || || ||||| || |||||| Sbjct 187644415 TCCAAGGTGATGGTCTTTCCAGTCAATGTCTTAACGAAAATCTGCATA 187644462 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| ||||| ||||| || ||||||||||| | || | || || ||||| Sbjct 149570936 GTGAAGGGTAGATTCTTTCTGGATGTTATAATCAGCAAGCGTACGACCATCCTCCAGCTG 149570995 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||||||| | |||| | ||||| || || || || ||||| ||||| ||| | | Sbjct 149570996 CTTACCAGCAAAAATCAACCTCTGCTGGTCTGGTGGAATACCTTCCTTGTC-CTGAATCT 149571054 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 ||| ||| | | || | || || | | ||||||||| | || | |||||| |||| Sbjct 149571055 TTGCTTTCACGTTATCAATGGTATCCGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCGG 149571114 Query 139740 TCAACGTTTTTACGAATATTTGCATAGCT 139768 | | || || |||||||| |||||| || Sbjct 149571115 TTAGAGTCTTGACGAATATCTGCATACCT 149571143 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| | ||||| || || ||||| |||||||||||||| Sbjct 187644006 GCCACCACGGAGACGAAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAATCAGC 187644065 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || ||||| ||||||||| | ||||| | ||||| || || || Sbjct 187644066 AAGGGTGCGACCATCCTCCAGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCTGGCGG 187644125 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || || || ||| | || | || | | || | || || | | ||||| Sbjct 187644126 GATACCCTCCTTATC-CTGAATCTTAGCCTTCACATTGTCAATGGTATCTGAGCTCTCCA 187644184 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | |||||| || |||| ||| || || || |||||||| Sbjct 187644185 CCTCCAAGGTGATCGTCTTCCCAGTCAGCGTCTTGACAAAGATTTGCAT 187644233 Score = 82.4 bits (90), Expect = 8e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| ||||| ||||| || || || || || ||||||||||| || || Sbjct 338697 GTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCGAGCTGCTTCCCT 338756 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TT 139686 ||| ||||||| | ||||| || || || ||||| || ||||| ||| | || || || Sbjct 338757 GCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTC-CTGAATCTTAGTCTT 338815 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | || || | ||||||||| | || | ||||| || ||||| || Sbjct 338816 CACATTGTCAATAGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCAGTCAAGGT 338875 Query 139747 TTTTACGAATATTTGCATAGCT 139768 || || || ||||||||| || Sbjct 338876 CTTCACAAAAATTTGCATACCT 338897 Score = 82.4 bits (90), Expect = 8e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| ||||| ||||| || ||||||||||| | || | || || ||||| Sbjct 149589190 GTGAAGGGTAGATTCTTTCTGGATGTTATAATCAGCAAGCGTACGACCATCCTCCAGCTG 149589249 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| | ||||| | ||||| || || || || ||||| || || ||| | | Sbjct 149589250 CTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGAATACCTTCCTTATC-CTGAATCT 149589308 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 ||| ||| | | || | ||| || | | ||||||||| | || | |||||| || | Sbjct 149589309 TTGCTTTCACGTTATCAATTGTATCCGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCAG 149589368 Query 139740 TCAACGTTTTTACGAATATTTGCATAGCT 139768 | | || || |||||||| |||||| || Sbjct 149589369 TTAGAGTCTTGACGAATATCTGCATACCT 149589397 >seq8 Length=153299543 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG-- 139609 || ||| | ||||| || || ||||| |||||||| || || ||| || |||| Sbjct 145827440 CAGAACAAGGTGAAGAGTTGATTCTTTCTGAATGTTGTAGTCAGTCAGGGT--TCGACCA 145827497 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| | |||||| |||||| | ||||| | |||||||| | || |||||||||||| Sbjct 145827498 TCTTCCAACTGTTTTCCAGCAAAAATCAGTCTCTGCTGATCAGAAGCTATGCCTTCTTTA 145827557 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| | || | | || | || ||| || ||| || || | ||| | Sbjct 145827558 TC-CTGAATTTTGGCCTTGACATTGTCGATGGTATCGCTGCTCTCAACTTCGAGGGTGAT 145827616 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | | | ||||| |||||||| ||||| Sbjct 145827617 GGTCTTTTCTATTAGGGTTTTCACGAATATCTGCAT 145827652 >seq9 Length=238794889 Score = 82.4 bits (90), Expect = 8e-11 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| ||||| ||||| || ||||||||||| | || | || || ||||| Sbjct 232658602 GTGAAGGGTAGATTCTTTCTGGATGTTATAATCAGCAAGCGTACGACCATCCTCCAGCTG 232658543 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| |||| | | |||||||| || || || ||||| || || ||| | | Sbjct 232658542 CTTGCCAGCAAAGATTAACCTCTGCTGATCTGGTGGAATACCTTCCTTATC-CTGAATCT 232658484 Query 139681 TTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 ||| ||| | | || | ||| || | | ||||||||| | || | |||||| || | Sbjct 232658483 TTGCTTTCACATTATCAATTGTATCCGAGCTCTCCACCTCCAAAGTGATCGTCTTCCCAG 232658424 Query 139740 TCAACGTTTTTACGAATATTTGCATAGCT 139768 | | || || |||||||| |||||| || Sbjct 232658423 TTAGAGTCTTGACGAATATCTGCATACCT 232658395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496053911298400